Showing 281 open source projects for "image analysis algorithm"

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  • 1
    Unsupervised TXT classifier

    Unsupervised TXT classifier

    Classify any two TXT documents, no training required - JAVA

    ...First, over-training and second, shortage of data for a training of categories. Instead, each TXT file is a category on its own, rather than an assigned category. In a way, this is similar to clustering but not really a clustering algorithm since there is some training involved. The summarizer from Classifier4J has been adjusted to accept two inputs (lets call them A and B). Then, the summarizer gets trained with A to summarize a document B, and vice versa. This extracts a relevant structure for both documents (and thus avoids the over-training) which are then compared using the Vector-Space analysis to give a range of belonging of one document to another (and thus avoids the shortage of information). ...
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  • 2
    CaspLab - Comet Assay Software Project Lab is a cross-platform image analysis software to measure level of DNA damage in SCGE (Single Cell Gel Electrophoresis) method called also comet assay method.
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    Downloads: 31 This Week
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  • 3
    Gerbil

    Gerbil

    Hyperspectral Image Visualization and Analysis Framework

    The Gerbil project moved to http://www.gerbilvis.org Please visit us there for up-to-date information and current software releases!
    Downloads: 1 This Week
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  • 4
    AsphaltOpen is a project to visualize data collected during road asphalting operations. Asphalt contractors can use the software to visualize their operations, learn from the visualizations, and improve their processes continually.
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  • 5
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image.
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  • 6
    Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
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  • 7
    NeSSi2

    NeSSi2

    Network security simulator

    At the moment NeSSi² is not actively maintained anymore since we are planning a successor project. NeSSi² is a network simulation tool suite addressing in particular network security aspects. Sample capabilities are profile-based attack generation, traffic analysis and support for attack/malware detection algorithm plugins.
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  • 8

    dbtesma

    efficient data generation for benchmarks and performance analysis

    Highly efficient Data Generator for Benchmarks and Algorithm Performance Analysis. Supports fully configurable schemata as well as meta structures like Foreign Keys and Functional Dependencies.
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  • 9
    Sharp Statistics

    Sharp Statistics

    A simple program for comparing data sets with simple algorithms.

    Replace the data in the data.db file with your own data using an sqlite3 manager. Tables are read as data set names, and the values are read as the data points of the data sets. Load the application, choose an algorithm, and the program will find the pairs that best match each other.
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  • 10
    GPU Edge Detector

    GPU Edge Detector

    GPU Interactive Program For Edge detection

    This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed. This project is partly based on the Sobel Filter sample available as part of the CUDA SDK. This project also partly uses the OpenCV library to load different types of image. This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify some variables such as sigma in Canny and see the result in real-time. ...
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  • 11

    ResultsDB

    Manage your algorithm results.

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  • 12
    PIVOT

    PIVOT

    PIVOT is a simple yet flexible visualization data tool

    PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. PIVOT displays an image...
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  • 13

    DeNovoCheck

    DeNovoCheck: Inheritance analysis for NGS trio data

    DeNovoCheck is intended to be used for inheritance analysis in NGS tio data. For rare dominant Mendelian diseases, patient-parent trios are often used to reduce the number of candidate variants. The algorithm bases the inheritance prediction on the data available in the parental BAM files and allows for a fast and reliable selection of potential de novo variants.
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  • 14
    Gandalf is a computer vision and numerical algorithm library, written in C, which allows you to develop new applications that will be portable and run FAST. Dynamically reconfigurable vector, matrix and image structures allow efficient use of memory.
    Downloads: 2 This Week
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  • 15
    AgED

    AgED

    AgED - Analysis given Experimental Data

    AgED performs automatic feature extraction from your image data and allows for their visualization and management. AgED relies on Elliptic Fourier Transcriptors to extract features from large quantities of image data. These features can then be visualized and you can evaluate them in a statistical manner. This type of analysis is particularly worthwile in the assessment of biological experiments.
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  • 16
    This is a GUI, Java implementation of the Ant Colony Optimisation/Particle Swarm Optimisation (PSO/ACO2) rule induction algorithm. This project was inspired by Ant-Miner, but handles continuous attributes using PSO or now Differential Evolution.
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  • 17

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer
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  • 18

    cancergrid-tma

    A web-based application for the management of tissue microarray images

    The Cancergrid Image Scorer is web-based application for the management and storage of tissue microarray (TMA) images and the associated metadata. The application enables the user to navigate a grid of TMA core images within a slide, zoom and pan around an image, and enter a score constrained to a specific scoring system. The submitted scores are scored in the eXist open source database, in an XML format, which is compatible with existing TMA standards, and thus allow the data to be archived and re-used in future analysis.
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  • 19
    Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
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  • 20

    Clusterfit

    Show stellar evolution and open clusters in a color-magnitude diagram

    This program is centered on a graphical Hertzsprung-Russell or color-magnitude diagram (CMD). It can show animated evolutionary tracks of stars of different masses, for a single star or a population of stars. In addition, it can show the CMD of a large number of existing open clusters, based on scientific survey data, and overlay isochrones (the curve in a CMD from stars born at the same time) to determine the age, distance and interstellar reddening of the cluster. Determining these...
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  • 21
    Analysis

    Analysis

    Application to creating charts.

    The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its.
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  • 22
    LeseSolm
    Download GPS track from the GPS logger "Solmeta Geotagger Pro" under Linux; Auslesen des Geotaggers * Geotag images with image direction, pitch, roll; Geotagging mit Blickrichtung * Altitudes/Höhen from geonames.org * NMEA analysis: DOP, satellite
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  • 23

    ISAD

    Individual Synaptic Activity Detection (ISAD)

    ...It computes synaptic signals from automatically segmented regions of interest and detects peaks that represent vesicle fusion events, thus, pre-synaptic activity. ISAD is based on MWA, which is a continuous wavelet transform based algorithm that employs multiple wavelets and is published as: Sokoll, S., Tönnies, K., and Heine, M. Detection of Spontaneous Vesicle Release at Individual Synapses Using Multiple Wavelets in a CWT-Based Algorithm. Med Image Comput Comput Assist Interv (MICCAI). 2012;15(Pt 1):165-72 ISAD is written in MATLAB and comes with a graphical user interface.
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  • 24
    ParsInsert
    ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm.
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  • 25
    EToS (Efficient Technology of Spike sorting; Extracellular recording To Spike trains) is an open-source system for spike sorting. EToS contains the programs of spike detection, feature extraction and clustering.
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