Search Results for "linux-debian" - Page 56
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Showing 14870 open source projects for "linux-debian"
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misc genomics tools
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586 These include * identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads * prokaryotic sequence/genome annotation * RNAseq analysis - normalisation and collation of multiple samples as a group * RNAseq visualisation All scripts are provided on a 'best efforts' basis, however due to various system changes I do not... -
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MasterSim
A co-simulation master for Functional Mockup Units (FMI 1.0 and 2.0).
A simulation master library, command line utility and user interface for simulating coupled systems of Functional Mock-up Units (FMU) for CoSimulation with FMI version 1 and 2. The master implements several modern algorithms, including Gauss-Seidel, Newton iteration, variable time stepping and step size control. -
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WSClean
WSClean is a fast widefield interferometric imager
WSClean (w-stacking clean) is a fast generic widefield imager. It uses the w-stacking algorithm and can make use of the w-snapshot algorithm. As of Feb 2014, it is 2-12 times faster than CASA's w-projection, depending on the array configuration. It supports full-sky imaging and proper beam correction for homogeneous dipole arrays such as the MWA. WSClean allows Hogbom and Cotton-Schwab cleaning and has wideband, multiscale, compressed sensing and joined-polarization deconvolution modes.... -
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W1RETAP
one-wire data logger for weather stations
...Files here are of historic interest only. w1retap is an application to log data from Dallas 'one wire' sensors to relational databases or files. It is developed on Linux, but should be portable to other POSIX systems. -
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Linha do Texto is a web based game for classificate semiotic text content from user input data with 1 to 4 parameters predifined in each section. It can be used to discuss discrete and continuous semantic categories in a scientific and educational fied.
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PeerSim is a simulation environment for P2P protocols in java. Its features include easy configuration, extendability and high performance.
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GenReg
Generation of regular graphs
Efficient, complete and non-redundant generation of regular graphs as described in M. Meringer: Fast Generation of Regular Graphs and Construction of Cages. Journal of Graph Theory 30, 137-146, 1999. -
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Side Cutters
Free CAD software
# Side Cutters Free CAD Software\ *The millimetre you see is the millimetre you get* ## Aim This software should be free. The aim of this project is to create a multi platform app while starting from a windows platform. It should create electrical drawings automatically and export them as bookmarked printable datafile (pdf). ## How? The software is licensed GPL/LGPL version 2. The Compiler is gcc 11.2.0, not Microsoft Visual Studio and the project is written in C, not in C#.... -
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CS-Studio is a user interface framework for control systems (EPICS, TANGO, TINE, ...) based on Eclipse RCP. Among the features are synoptic/archive/trend/alarm displays.
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Curv
A language for making art using mathematics
Curv is a programming language for creating art using mathematics. It's a 2D and 3D geometric modelling tool that supports full colour, animation and 3D printing. Curv is a simple, powerful, dynamically typed, pure functional programming language. Curv is easy to use for beginners. It has a standard library of predefined geometric shapes, plus operators for transforming and combining shapes. These can be plugged together like Lego to make 2D and 3D models. Coloured shapes are represented... -
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slimcpplib
Simple Long Integer Math for C++
SLIMCPP is C++ header-only library that implements long integers that exceed maximum size of native type supported by a specific compiler by 2-4 times. All classes, methods and functions were not created or designed to work with huge numbers, for which there are specialized big integer mathematical libraries. In some cases, it is necessary to temporarily perform calculations with precision exceeding the maximum supported size of integers, and then return the result to its native size again. -
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MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support... -
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MITRE Annotation Toolkit
A toolkit for managing and manipulating text annotations
The MITRE Annotation Toolkit (MAT) is a suite of tools which can be used for automated and human tagging of annotations. Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. It can be customized for specific tasks (e.g.,... -
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PythonStarSplitter
A Python Script I made to split a starfield image into several layers.
A Python Script I made to split a starfield image into several layers. To be able to use the script, PixInsight with an installed Gaia data catalogue is required, as it needs the exported astrometry data text file. -
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FreeCAD-PCB
Import your PCB boards to FreeCAD
[ENG] Mod FreeCAD-PCB allow you to import PCB boards to FreeCAD. Scope of mod: - support for many different layers, - possible to choose colours, transparency and names for each layer, - mod allows you to import IGES models with colours, - possible to show holes/vias independent. [PL] Moduł FreeCAD-PCB pozwala na importowanie płytek PCB do programu FreeCAD. Możliwości modułu: - wsparcie dla wielu różnych warstw, - wyświetlanie otworów, przelotek niezależnie od siebie, -... -
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opencpnplugins
Plugins for OpenCPN
This project hosts various plugins for the OpenCPN chart plotter, which are not bundled with the core package. OpenCPN is a free software (GPLv2) project to create a concise chart plotter and navigation software, for use underway or as a planning tool. OpenCPN is developed by a team of active sailors using real world conditions for program testing and refinement. -
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ESP32 BLE Keyboard library
Bluetooth LE Keyboard library for the ESP32
This library allows you to make the ESP32 act as a Bluetooth Keyboard and control what it does. Compatible with Android. Compatible with Windows. Compatible with Linux. Compatible with MacOS X (not stable, some people have issues, doesn't work with old devices). Compatible with iOS (not stable, some people have issues, doesn't work with old devices). There is also Bluetooth-specific information that you can set (optional): Instead of BleKeyboard bleKeyboard; you can do BleKeyboard bleKeyboard("Bluetooth Device Name", "Bluetooth Device Manufacturer", 100);. ... -
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Toxtree: Toxic Hazard Estimation
Toxicity prediction for chemical compounds
A GUI application which estimates toxic hazard of chemical compounds. The latest version includes the following toxicity prediction modules: -Cramer rules (oral toxicity) -Toxicity mode of action via Verhaar scheme -Skin irritation and Eye irritation prediction -Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction -START biodegradation and persistence prediction -Skin sensitisation reactivity domain -Kroes TTC Decision tree -SMARTCyp - Cytochrome P450-Mediated... -
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ECOLOG
A database management system for ecological field surveys
ECOLOG is a specimen-based, cross-platform relational database management system, aimed at the storage, retrieval and preliminary analysis of data on sites, species, and specimens gathered in ecological field surveys and biodiversity inventories. The main goal of ECOLOG is to make the data gathered in ecological field surveys readily accessible, providing lists of species collected in the study area and informations on habitat preferences, abundance or rarity of a given species, biometrics,... -
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The Artificial SEM Image Generator (ARTIMAGEN) is a library that generates artificial scanning electron microscope (SEM) and helium-ion microscope images of various samples, including gold-on-carbon resolution sample, or some semiconductor features.
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GFtbox is a Matlab package for simulating biological growth of leaves, petals, and similar organs.
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Argos Translate
Open-source offline translation library written in Python
Argos Translate uses OpenNMT for translations and can be used as either a Python library, command-line, or GUI application. Argos Translate supports installing language model packages which are zip archives with a ".argosmodel" extension containing the data needed for translation. LibreTranslate is an API and web-app built on top of Argos Translate. Argos Translate also manages automatically pivoting through intermediate languages to translate between languages that don't have a direct... -
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SmartSoft is a framework for developing component-based robotics systems. SmartSoft components are based on a small set of predefined component interaction patterns to strictly enforce component decoupling and to support off-the-shelf reuse.
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adcptools
Set of functions to process acoustic Doppler current profiler data
adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments.
