Showing 2578 open source projects for "command-line kill linux"

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  • 1
    Gebabbel

    Gebabbel

    A frontend for gpsbabel

    Gebabbel is a GUI for the famous gpsbabel, a command line tool to convert various GPS file formats back and forth. Thanks to gpsbabel, you cannot only convert files but also exchange data with your GPS device (e.g. Garmin and Magellan) directly.
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  • 2
    iTree: scalable multithreaded phylogenomic pipeline
    Downloads: 0 This Week
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  • 3

    tagfs

    Tag based file manager CLI

    A Tag based file management system. Command line interface. User can add tags for files (individually or for the folder). Allows search by tags.
    Downloads: 0 This Week
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  • 4

    SchizoHit

    cluster paired-end sequences

    Like CD-HIT, but works with paired-end reads
    Downloads: 0 This Week
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    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
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  • 6

    Online XOR Coding

    Online XOR packet coding BENEFIT

    The project page provides the source code of custom built simulators used in our publications whose URL are given as follow: http://dx.doi.org/10.1016/j.comcom.2013.09.006 http://dx.doi.org/10.1109/PIMRC.2009.5449983 The titles of the papers are: Online XOR packet coding: Efficient single-hop wireless multicasting with low decoding delay (COMCOM VERSION). An efficient network coding based retransmission algorithm for wireless multicast (PIMRC VERSION). Help (README) files...
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  • 7

    Molcrunch

    An atomic or molecular electronic properties computational package

    THE NEW, 11/7/2013 VERSION OF MOLCRUNCH IS HERE Molcrunch is an atomic or molecular electronic properties computational package. It provides Gaussian and Slater orbital support for SCF, MCSCF, and orthogonal or nonorthogonal orbital CI calculations. Its most sophisticated feature is a configuration manipulation CI package that provides symmetry filtering, orbital occupation selection, and a choice of many other wave function and/or basis characteristics. The symmetry filtering...
    Downloads: 3 This Week
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  • 8
    DOMjudge programming contest jury system

    DOMjudge programming contest jury system

    DOMjudge is an automated judge system for programming contests.

    NOTE: DOMjudge has moved to www.domjudge.org and Github for all development. DOMjudge is an automated judge system to run programming contests. Both team and jury side interfaces are web based, with a command line submit tool available as well. It is written in PHP, shell-script and C/C++ and needs MySQL and a webserver.
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  • 9
    guiLiner provides a representation of another program's options and information, enabling one to run a command line program directly from a GUI. In other words, guiLiner creates a GUI for almost any command-line program.
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  • 10
    Generate pdf diagrams for analemmatic sundial construction, papercraft sundial, and "plus" card game.
    Downloads: 3 This Week
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  • 11
    A pipeline to revise a genome sequence of a prokaryotic sample via an iterative backbone remapping and local assembly method.
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  • 12

    MendelScan

    Variant scoring and linkage mapping for family exome sequencing

    MendelScan is a tool for prioritizing candidate variants in family-based studies of inherited disease.
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  • 13

    SunlightDPD

    Open source codes related to dissipative particle dynamics

    SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code.
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  • 14
    Statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. They make the PDL shell work like R, but with PDL threading (fast automatic iteration) of procedures including t-test, linear regression, and k-means clustering.
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  • 15
    BETR-Research (BETRS) is a modelling framework to create spatially resolved multimedia models for the environmental fate- and transport of chemical contaminants. It is intended to serve the research community and can be used as a teaching tool.
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  • 16
    TagCleaner
    TagCleaner is an application that is able to automatically detect and efficiently remove tag sequences from metagenomic datasets. It is easily configurable and provides a user-friendly interface.
    Downloads: 3 This Week
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  • 17
    TifaMMy isn't the fastest Matrix Multiplication yet! A library for cache oblivious matrix operations using the space filling Peano curve. Aim is for BLAS / LAPACK functionality (but with an intuitive C++ API).
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  • 18
    Java application for training and deploying text processing applications such as part-of-speech taggers, based on a re-implementation of Brill's algorithm in Java.
    Downloads: 0 This Week
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  • 19
    Perstem
    Perstem is a Persian (Farsi) stemmer, morphological analyzer, transliterator, and partial part-of-speech tagger. Inflexional morphemes are separated or removed from their stems. Perstem can also tokenize and transliterate between various character set encodings and romanizations.
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  • 20

    PPSeq: Parallel NGS Analysis

    Parallel Processing for Next-Generation Sequencing (NGS) Analysis

    High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive...
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  • 21

    mbclient

    Linux Modbus TCP Client

    A command line tool to query Modbus TCP hosts. At this stage, the client allows read holding registers only. Useful to read data registers from PLCs or any Modbus TCP compatible equipment.
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  • 22
    MpcReader retrieves comet and asteroid orbital data in MPC format from the web and store it on your computer in different formats. The data is fetched from the MPC. The main job of MpcReader is to convert plain MPC data to the format needed for KStar
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  • 23
    AnyBed: a testbed-independent topology configuration tool
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  • 24

    Musket - short read error corrector

    a parallel short-read error corrector for Illumina sequencing

    Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates...
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  • 25

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
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