YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.
GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
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Open source web tool to help you in the data visualisation
SVGMap is an open source web tool to help you in the visualisation of experimental data associated to some graphical representation.
More at :
1. Project website
http://bg.upf.edu/svgmap
2. Reference :
Xavier Rafael-Palou, Michael P. Schroeder, and Nuria Lopez-Bigas
SVGMap: configurable image browser for experimental data
Bioinformatics 2011 : btr581v1-btr581.
Databases to aid Metabolomics projects providing storage functionality for raw and preprocessed data, and integration with existing data analysis environments.
MySHI (My Self Health Information) is a database for tracking personal health information. The current focus is on nutritional information but other important data items will follow. Documentation is available under "Hosted Apps"/"MediaWiki"
This is a flexible, extendable, parallel, and distributed supply chain simulator, which creates large scale test data sets for Design Science Projects, especially for large scale EPC systems.
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Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
A framework to support scientific experiments: acquiring, visualizing, analyzing, and managing experimental data. Initially developed to support the experimental process on two beamlines at the Canadian Light Source synchrotron (lightsource.ca).
An application built onto the Open Table Explorer engine for the acquisition and analysis of home energy consumption and solar energy production.Moved to github as Open Table Explorer
Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
Jitterbit is an open source integration tool that delivers a quick and simple way to design, configure, test, and deploy integration solutions. It supports many document types and protocols: XML, web services, database, LDAP, text, FTP, HTTP(S), file
Example-based Modeling (EMO) is an tool to create data models, with examples, using a web interface. You interactively create a web-accessible database of models and samples for those models. A white paper describes the underlying assumptions.
That project aims at providing a clean service API, and the corresponding C++ implementation, for freely available geographical-based services on the Internet (e.g., GeoIP service by the GPL-based software77 database, Yahoo! GeoPlanet, etc.).
SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
This project is discontinued. If you would like to take on the maintenance, please contact me at https://mastodon.social/deck/@mrtmd
Open Bioprocess Monitor aims to be open source remote monitoring system for bioreactors. System (written in php) can display all available data in a web browser. Currently system has been built as a proof of concept for educational purposes.
This workbench tries to manage and analyze neuroscientific animal data with an emphasis on behaviorally orientated experiments. It's goal is to use the behavioral experimental data (stimulus, task, species...) as its source and perform analysis to e
The Minervan project aims at aiding intelligent software development. It integrates reporting, analysis and data mining to support better decision making.