Search Results for "linux programs" - Page 4
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Showing 417 open source projects for "linux programs"
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Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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ParamIT
a Toolset for Molecular Mechanical Force Field Parameterization
ParamIT is a toolkit aiding the development of molecular mechanical force field parameterization of small, drag like, molecules within CHARMM general force field (CGenFF) protocol. The developed toolkit helps the researchers in following ways: 1) automating the creation of multiple input files for quantum and molecular mechanics programs, 2) automating the output analysis and 3) substitute the use of full MM programs with a faster specialized one. The developed tools include: 1) generator of... -
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mssolutions
Makes magic squares.
These programs make magic squares and rectangles using "Constraint-Based Local Search". (For non-square rectangles, input the order as two numbers.) There are 3 similar programs: CompleteSquare, CompleteSquareSteps, and MagicSquares. Given an input square with some cell values between 1 and NxN specified, (and other cell values 0), CompleteSquare attempts to complete a magic square by placing the remaining values. The square type can be input as semimagic, magic, or... -
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Polynomial System Solver
pss5 is a polynomial system solver, under development.
The objective of this project is to build a general-purpose polynomials system solver. While a few of those programs are available, this one will incorporate recent mathematical advances on mixed volume computations, sparse condition numbers and condition-metric homotopy. -
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Complex Curved Shapes Generator Programs
Extended emulation of metalic gear toy, creates curved line designs.
This computer program is an exact emulation of a toy which was sold years ago called Magic Designer. There are 4 versions - MS Windows one written in Euphoria and C and one written for the Web for people who do not have a Windows computer. An Android version. And a new cross platform version. -
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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AntibiogramJ
AntibiogramJ is a Java program for the reading of antibiogram-images
AntibiogramJ is a Java program for the identification, measurement and categorisation of inhibition zones in antibiogram images captured with any device that incorporates a camera (including digital cameras and mobile phones). Citing AntibiogramJ: A. Alonso, C. Domínguez, J. Heras, E. Mata, V. Pascual, C. Torres, and M. Zarazaga. AntibiogramJ: a Tool for Analysing Images from Disk Diffusion Tests. Computer Methods and Programs in Biomedicine 143:159-169. 2017. DOI:... -
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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FastFlow: programming multi-core
Pattern-based multi/many-core parallel programming framework
...FastFlow works on x86, x86_64, PPC, ARM, and Linux, Mac and Win XP/7. From Jan 1, 2018 code development migrated on GitHub at https://github.com/fastflow/fastflow -
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MCTDHTools
A library to easily analyse output of the Heidelberg MCTDH code
This project aims to provide a set of routines to easily read in and manipulate the output of the Heidelberg MCTDH code. The goal is to enable a new user to quickly get started with writing custom analysis programs. Also, it should enable more experienced users (== us) to write small, clean, and testable analysis programs, something that seems incompatible with the Fortran-77 code of the Heidelberg MCTDH package. -
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PiXtend
every project needs a solid base
...The PiXtend Platform provides numerous digital and analog inputs & outputs as well as a variety of serial interfaces like RS232, RS485 and CAN. In this repository you can find the Linux C library called "pxdev" that can be used to develop your own Linux applications for the PiXtend system (V1 & V2). Sample programs for every PiXtend version are also included in this repository. The build file compiles them all - the library itself and the sample programs. Find out more about this on our website: https://www.pixtend.de or https://www.pixtend.com -
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CIF2Cell
Generating cells for electronic structure calculations from CIF files
CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published... -
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A Suite of Programs implementing a fast approach to the Debye Function Analysis (DFA) of powder diffraction data from nanocrystalline and/or non-ordered materials. See J. Appl. Cryst. 2015, 48, 2026-2032
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Convert C++ software programs into synthesisable Verilog using the Clang compiler frontend to parse and SystemC for intermediates.
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ILA - teachable voice assistant
ILA is a fully customizable and teachable voice assistant for Java
ILA stands for (kind of) intelligent, learning assistant and is a speech recognition system aka voice assistant very similar to Siri, Google Now and Cortana. ILA is fully customizable and you can teach her/him/it new things by yourself like executing system commands, opening web pages, programs and apps or just some basic conversation :-) ILA runs on Java und thus is compatible to Windows, Mac and Linux. It is designed to integrate with your home enviroment and for example build up your own, free and open Amazon Echo replacement ;-) Right now the key components of ILA are the open source speech recognition CMU Sphinx-4, Google (Speech Recognition/Text-To-Speech) and MaryTTS (Text-To-Speech). ... -
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Terra Incognita
GPS mapping and management software
Program for downloading web source maps or local files maps for various programs or GPS devices. Terra Incognita™ main features: navigating through map by simple clicking generating OziExplorer, Kmz, JNX, GPSdash or TrekBuddy calibrated map file possibility to use many web map sources Google Maps™, Bing™, Open street map ... managing of waypoints or tracks saved in gpx and many other formats selected user defined map area for saving simplified and easy user... -
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Vector network Analyzer (VNA)
Save Touchstone files and load calibration kits from HP & Agilent VNAs
Software for the control of HP, Agilent and Keysight vector network analyzer, such as the 8753, 8720 series using GPIB. Designed for Unix / Linux systems, using a National Instruments GPIB board. There are programs * 'vna' to save Touchstone files. * 'calkit' to upload calibration kit definitions to the VNA, including the properties of the shorts, opens and thrus. This is alpha software, and has little documentation. Contact the author, Dr. David Kirkby at https://www.kirkbymicrowave.co.uk/ drkirkby@kirkbymicrowave.co.uk for help. -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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This is a project aiming at creating programs for calculations in piecewise linear topology and mathematical physics—finite-dimensional topological quantum field theories—using GAP computer algebra system.
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This project contains some programs that designed to process gravity data through applying of the reductions to determine the Bouguer gravity anomaly and to model the subsurface structures by forward and inverse methods as well as some programs to determine geodetic parameters from geopotential models. This project may be useful in Geodesy and Geophysics.
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use... -
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Pinguino IDE
Pinguino packages
Pinguino is an electronics prototyping platform. It supports different 8- and 32-bit ©Microchip microcontrollers, all with built-in USB module. Pinguino comes with a USB Bootloader, a small program running inside the microcontroller which is responsible for transferring your application from your PC to the microcontroller memory and handing over the control to this program afterwards. No programmer is then needed, only a USB cable and a PC. Pinguino is also an Integrated Development... -
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S2CBench
Synthesizable SystemC Benchmark Suite
S2CBench v.2.0 provides 18 programs written in synthesizable SystemC language. Each benchmark is designed for specific domains such as multimedia, digital signal processing, security, image processing, etc. The programs are provided with the objective to enable researchers analyze their innovative algorithms and techniques and help users compare the quality of results of state of the art commercial High Level Synthesis tools available in industry. You can log in to our Youtube channel to... -
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This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
