Showing 4338 open source projects for "cynetsvm-java"

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  • 1

    SuRankCo

    Supervised Ranking of Contigs in de novo Assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y....
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  • 2
    Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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  • 3
    SBSI
    SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
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  • 4
    MathOCR

    MathOCR

    A printed document recognition system that can deal with formula

    MathOCR try to recognize printed scientific document including mathematical formula , result is available in LaTeX and HTML.
    Downloads: 3 This Week
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  • 5

    UNSW Metadata Stores (ResData)

    An institutional research metadata management repository.

    ResData is an institutional metadata repository to facilitate effective management, discovery and sharing of institutional research data collections. It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS)...
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  • 6

    CUDAlign

    CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs

    CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU....
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  • 7
    Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.
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    Downloads: 12 This Week
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  • 8

    S1TBX

    Sentinels Application Platform (SNAP)

    ESA Sentinel Toolbox for Earth Observation
    Downloads: 0 This Week
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  • 9

    DiSir

    In-silico digestion of proteins.

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  • 10
    PepSir

    PepSir

    PepSir checks and filters for peptide proteotypicity.

    PepSir checks and filters for peptide proteotypicity.
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  • 11
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
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  • 12
    Auto Primer3

    Auto Primer3

    Automatically design primers to genes/coordinates using primer3.

    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes...
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  • 13
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  • 14

    NexusDataLink

    Connect, monitor and control your (embedded) systems remotely. m2m/IoT

    Connect, monitor and control your systems or embedded devices remotely (m2m/IoT) - for example your Raspberry Pi. The communication interface is defined in XML automatically providing a REST interface. NexusDataLink integrates smoothly in existing software or firmware and significantly reduces connection- or communication-related source code.
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  • 15
    p-TAREF

    p-TAREF

    Plant miRNA target prediction tool

    Developed by Dr Ravi Shankar (Corresponding author) and Ashwani Jha @ SCBB, CSIR-IHBT. p-TAREF stands for plant TARget REFiner. It identifies plant microRNA targets on the basis of multiple feature information. Read more http://www.biomedcentral.com/1471-2164/12/636 Query, comment etc please mail any one of us @ ashwanijha.bioinfo@gmail.com or ravish9@gmail.com
    Downloads: 0 This Week
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  • 16
    A mapping application written in Java that displays Ordnance Survey maps downloaded from OS's getamap website or maps from the OpenStreetMap project. It is possible to add new map sources or extra functionality through plugins.
    Downloads: 1 This Week
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  • 17
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  • 18
    JInsect
    The JINSECT toolkit is a Java-based toolkit and library that supports and demonstrates the use of n-gram graphs within Natural Language Processing applications, ranging from summarization and summary evaluation to text classification and indexing.
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  • 19
    Exreco

    Exreco

    EXperimental REplicator COllider

    The project is moved to GitHub : https://github.com/bekisz/exreco/ Exreco is a agent based platform for the simulation and study of the Darwinian evolutionary process. It aims to support the exploration of genetically rooted phenomena like - aging (programmed cell death) - sexual and asexual reproduction - altruism of individuals - spread of diseases The typical way of using Exreco starts by defining the behavior of your replicators ( agents that can reproduce and evolve over...
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  • 20

    gametes

    Generate complex SNP models and heterogeneous datasets

    Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software...
    Downloads: 7 This Week
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  • 21

    OntoMetriCalc

    A Java API for measuring OWL ontologies

    OntoMetriCalc (Ontology Metrics Calculator) is a Java API for measuring OWL ontologies based on Jena.
    Downloads: 0 This Week
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  • 22
    CPS Wildfire Management Tool

    CPS Wildfire Management Tool

    A wildfire decision support system and visualization tool from Emxsys.

    ...WMT incorporates a 3D terrain viewer, the tenets of the Campbell Prediction System (CPS) and the Rothermel fire spread equations to depict fire behavior. WMT is used to adjust tactics & strategies to ensure the safety of firefighters and the effective use of firefighting resources. Requires Java 8 (included) - http://www.java.com/download
    Downloads: 0 This Week
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  • 23
    HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses. Please go to the homepage below for the latest version!
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    Downloads: 28 This Week
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  • 24
    GenomeView
    GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
    Downloads: 0 This Week
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  • 25
    mathtoweb
    MathToWeb is a Java-based authoring tool that converts mathematical expressions written in AMS-Latex to presentation MathML. It can be applied to single equations or entire documents containing many hundreds of equations.
    Downloads: 3 This Week
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