Showing 103 open source projects for "cloud"

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  • 1
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ...Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. Please visit the Cloudomics, project for cloud-based resources: https://sourceforge.net/projects/cloudomics-for-aws/
    Downloads: 0 This Week
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  • 2
    Mobile Data Collector (MARITACA)

    Mobile Data Collector (MARITACA)

    Mobile Data Collector for Android devices

    Maritaca easily creates mobile applications for data gathering in Android smartphones. No programming skill is needed. The answers collected are stored in the cloud and can be latter accessed to create statistical data and reports. Try it: http://maritaca.unifesp.br
    Downloads: 0 This Week
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  • 3

    Virus QSP Modeling

    C++ and Python code for simulating RNA virus replication

    Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.
    Downloads: 1 This Week
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  • 4
    ...The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. The command line tools of Hadoop-BAM should be understandable to all users, but they are limited in scope. ...
    Downloads: 0 This Week
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  • 5
    My Components' DB

    My Components' DB

    MCDB helps you to manage all of your electronic components.

    ...You can store, through the program, all of your components in a database file, in this way you can monitor the availability of each component in order to buy new parts before finishing them. You can also store your database files on a cloud service in order to access them from everywhere, you'll just need a PC with MCDB installed. MCDB will be available on the Ubuntu Software Center soon.
    Downloads: 0 This Week
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  • 6
    NG-CloudMS

    NG-CloudMS

    Next Gen Cloud Management System (NG-CloudMS)

    Next Gen Cloud Management System (NG-CloudMS) is a new web based end-to-end OCX management tool that is distributed by Opt/Net under GNU Public License (GPL). This prototype provides near real-time visibility of the networks and cloud infrastructures and interconnected computing and data storage resources. It therefore can assist the operators with visualisation and localization of the causes of potential incidents.
    Downloads: 0 This Week
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  • 7
    Manifold mesh processing

    Manifold mesh processing

    Mesh and point cloud processing tools

    A suite of tools for processing and analyzing meshes and point clouds. 1) Ensuring that meshes are manifold, ie, "nice" 2) Simple smoothing/noise reduction 3) Bare-bones point cloud to mesh and robust normals for point clouds 4) Mesh simplification 5) Curvature calculation on meshes 6) Local shape descriptors on meshes
    Downloads: 0 This Week
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  • 8

    Canopy Reconstruction

    Software for the reconstruction of plants using multiple camera views

    This software reconstructs 3D plant models in multiple views. Point cloud input is segmented, then patches of leaf surface are grown using the level set method. Please see the CPIB website for news of updates and further development.
    Downloads: 0 This Week
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  • 9

    OSGC - OpenSource Geospatial Catalogue

    OpenSearch GeoSpatial Catalogue

    OSGC is an Open Source implementation of an OpenSearch GeoSpatial Catalogue compliant to OGC 10-32r3 specification, developed by EGI.eu (http://www.egi.eu/) under the ENVRI (http://envri.eu/) project. OSGC provides a catalogue engine built on top of a PostgreSQL+Postgis database, which exposes a cusmizable OpenSearch interface. Most of the application configuration can be set from the Admin web interface, while Data Administrators have a separated Dropbox interface, which ease the...
    Downloads: 0 This Week
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  • 10
    CReST

    CReST

    CReST: The Cloud Research Simulation Toolkit

    The Cloud Research Simulation Toolkit (CReST) is a cloud computing simulation platform written in Java.
    Downloads: 0 This Week
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  • 11
    ActiveFolder

    ActiveFolder

    ActiveFolder can be integrated with existed scientific computation.

    ...ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification.
    Downloads: 0 This Week
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  • 12
    Opal Toolkit
    Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
    Downloads: 0 This Week
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  • 13
    Gpf4Med

    Gpf4Med

    Graph Processing Framework for Medical Information

    Gpf4Med is a graph processing framework for clinical data, which can leverage from previously existing medical database and Cloud computing facilities to address large-scale studies.
    Downloads: 0 This Week
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  • 14
    An easy-to-use simulator for decentralized distributed scheduling in Clusters, Grids, and Cloud ecosystem MaGate 2.0 is now available from github! https://github.com/huangye177/magate
    Downloads: 0 This Week
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  • 15
    Point Cloud Library

    Point Cloud Library

    Standalone, large scale, open project for 3D point cloud processing.

    The Point Cloud Library (PCL) is a standalone, large scale, open project for 2D/3D image and point cloud processing. PCL is released under the terms of the BSD license, and thus free for commercial and research use. We are financially supported by Open Perception, Willow Garage, NVIDIA, Google, Toyota, Trimble, Urban Robotics, Honda Research Institute, Sandia, Dinast, Optronic, Ocular Robotics, Velodyne, Fotonic, Leica Geosystems, and MKE.
    Downloads: 59 This Week
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  • 16
    Media Cloud allows automated downloading and analysis of on-line media. It is intended to automate what was previously a tedious process of painstaking manual content analysis.
    Downloads: 0 This Week
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  • 17

    EkNN

    Extracting k nearest neighbors for point cloud

    Speed up kNN searching algorithm by extracting nearest neighbors diectly other than searching them one by one
    Downloads: 0 This Week
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  • 18
    Nature
    ...The primary goal of the project is to deliver the open source that provides the foundation for potentially complex CFD solutions capable of carrying computing in the distributed environment and particularly the Cloud computing.
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  • 19

    BriCS

    SaaS for running simulation models in the cloud

    The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser.
    Downloads: 0 This Week
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  • 20
    ocland

    ocland

    OpenCL Land, the OpenCL cloud computing interface.

    OpenCL Land is the OpenCL cloud computing interface.
    Downloads: 0 This Week
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  • 21

    connect3d

    Reconstruct Water-Tight Triangulation from Point Cloud

    This software reconstructs water-tight triangulations from point clouds, interpolating the points. It approximates the triangle mesh which minimizes the sum of all triangles' longest edge. As a result, it can interpolate much more sparse sampling as state-of-the-art algorithms. Run-time is in practice linear to that of the Delaunay triangulation of the points. The software is designed as a command-line tool. It can also be used as a library. A plug-in for the Meshlab geometry software is...
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  • 22
    ZPR is a program that produces orthophotos. The method used is to give colors to point-cloud (photo obtained by a digital camera, cloud obtained by a laser scanner) and to project the point-cloud to a requested plane. With this method, the projection pla
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  • 23

    HadStat

    HadStat is service on cloud,for data analysis using Hadoop MapReduce.

    HadStat is service on the cloud, allow you to analysis the data on the cloud and return the result in nice graph,this service is free, you can redistribute it and/or modify it under the terms of the GNU General Public License. this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices.....
    Downloads: 0 This Week
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  • 24

    MCloudSim/NovaCloudSim

    a distributed cloud simulator written in Java

    ...MCloudSim has following characteristics: (1) The overlay protocol can be freely replaced, and we have already ported Pastry, Kadmelia, Chord from PeerSim; (2) A Petri-Net workflow theory based task model is implemented to simulate distributed tasks; (3) A distributed cloud can be easily built by assembling and expanding the basic resource entities provided by the simulator. (4) ... If you have any questions, please contact nova@dsp.ac.cn.
    Downloads: 0 This Week
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  • 25

    Jnomics

    Jnomics is a collection of cloud-scale DNA sequence analysis tools

    Jnomics is a collection of cloud-scale DNA sequence analysis tools
    Downloads: 0 This Week
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