Search Results for "linux file parser" - Page 27
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Showing 1604 open source projects for "linux file parser"
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The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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Protdraw
Create portable, flexible domain drawings of protein sequences
For ProtDraw to work on MacOS Yosemite, you must install a patched Pert Tk. Go to https://github.com/eserte/perl-tk and click the Download zip button. Run the unzip command, cd to the extracted directory and follow the directions in the 'INSTALL' file (using 'sudo' if necessary). ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified... -
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Average
Command-line calculator of basic statistics.
Average is a simple and fast command-line Perl utility for calculating basic statistics on a list of numbers (one number per line). It works as a traditional Unix filter and can be used as part of those greatly useful chains of piped commands. It calculates average (arithmetic mean), standard deviation, median, total sum, minimum and maximum values present, and shows the number of processed numbers. Entry can by a text file (any column can be specified, default is the first) or... -
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This is a simple software for performing various statistical and mathematical operations on single ASCII data-files. Entire file is read into an array, which is then analyzed. Number of columns is detected automatically.
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Conceptpower
Conceptpower is an authority file service.
Conceptpower is an authority file service, which is based on WordNet 3.0 (http://wordnet.princeton.edu) and can be extended as needed. Each entry in Conceptpower is identified by an URI, which should be used to refer to a particular entry. Conceptpower has three parts: a public search function, a management component, and a basic REST interface. The public search function provides the user with basic search functionality. The management component provides a simple user management, and term... -
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Curvilinear and Rectilinear Motions
Simple physics simulation of Curvilinear and Rectilinear Motions
This project has the role of simulating simple Curvilinear and Rectilinear Motions with an easy to use user interface. This program can be used for educational purposes as well as for any other purpose anyone would like. The executable file is a .jar files which means that it can run in any operating system that supports java. Above you can see a screenshot of the program while it is operating. -
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Docear
An Academic Literature Suite
Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology... -
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VIGOR3
Annotation of Viral Genomes
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID). http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf contact: Jeff Hoover 301-540-7858 jefhv@aol.com -
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Quadriga
Quadruple Network Management System
Quadriga is a web-application that acts as a clearing-house for text annotations -- in the form of contextualized triples, or “quadruples,” that form complex graphs -- generated with the Vogon desktop application (https://sourceforge.net/projects/gobtan/), and as an environment for managing text-annotation projects. It relies on a central authentication system for user authentication, a dictionary service (Wordpower) and an authority file service (Conceptpower). Quadriga can connect to a... -
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datadensityplot
Creates a data density plot of a 2 dimensional data distribution.
...The program uses sum of reciprocal squared distance to calculate density at each point, with a smear factor to prevent points going to infinity. The smear factor also controls the amount of clustering. There are several options for colour output. Input is via a csv (comma-separated values) file. Now there's a nice GUI built in Baby X for Linux and Windows -
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EqualX
The LaTeX Equation Editor
EqualX makes you easily write equations in LaTeX and preview them in real-time. repository: https://gitlab.com/q-quark/equalx -
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations. -
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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basecv
BCV is DNA base caller with vocabulary
The Base Calling with Vocabulary (BCV) software package is intended for analysis of direct (population) sequencing chromatograms using known vocabulary sequences similar to the target DNA. The current version of BCV can only process chromatogram files obtained on Applied Biosystems capillary sequencing machines (ABIF file format). -
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obstbaumpate
Obstbaum Verwaltung
Mit dem Obstbaumpaten lassen sich einfach Obstbäume an Wegesrändern verwalten. -
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House Builder
This program solves the house building problem.
The file house_builder_backtrace.f is a Fortran program for solving the house building problem as described by Dr. James Grime (aka singingbanana). One of the many 17 point solutions is 0.029 0.542 0.852 0.270 0.710 0.423 0.926 0.138 0.620 0.343 0.777 0.207 0.485 0.971 0.092 0.667 0.382 There are no 18 point solutions. -
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fqzcomp
A fastq compression program
Fqzcomp is a basic fastq compressor, designed primarily for high performance. Despite that it is comparable to bzip2 for compression levels. -
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts. Potential false positives arising from spurious alignments are filtered out via a... -
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caplib
Correct, translate and analyze combinatorial library sequencing data
Originally developped to handle PacBio CCS data for an AAV capsid library. This program will extract, correct, translate and analyze the sequencng data, starting from the CCS fastq file. -
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MOSAT is a project to monitor the departures at various stations of a light rail or subway system. It is currently operational on the light rail system in Guadalajara Mexico. HTML files are updated in real-time to show the departures for central control.
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Open PECTool
Open PECTool - manipulate peroidic error data for Celestron mounts.
This is clone of the Celestron PECTool used to upload, download and manipulate PEC data. It is intended to work with Celestron Nexstar mounts like NexStar GPS, NexStar GPS-SA, NexStar iSeries, NexStar SE Series, NexStar GT, Advanced-VX, Advanced-GT and CGE mounts. Communication to the hand control is 9600 bits/sec, no parity and one stop bit via the RS-232 port on the base of the hand control. To build it libnexstar version 0.11 or newer is needed, which can be found here:... -
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Application File Bucket
Small application to open multiple file with a pre-processor
This application is to open multiple files in one pre-processor using a single click. -
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hiovit-A
hiovit-A is a simple yet flexible data visualization tool
hiovit-A, a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. Hiovit-A can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section hiovit-a). The output of hiovit-A is a simple and intuitively easy to grasp visualization of a complex dataset. Previously known as PIVOT (Protein Interaction Visualization and Observation Tool)
