Showing 4124 open source projects for "dr java windows"

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  • 1
    CoNet

    CoNet

    Find relationships between repeatedly observed items

    CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data. It has been designed with (microbial) ecological data in mind, but can be applied in general to infer relationships between objects observed in different samples (for example between genes present or absent across organisms).
    Downloads: 1 This Week
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  • 2
    RoWordNetLib

    RoWordNetLib

    Java API for the Romanian WordNet

    Java API for the Romanian WordNet. Please note that the actual WordNet for Romanian (the XML file containing the network) is not included, it can be obtained (due to its license restrictions) from: http://ws.racai.ro:9191/repository/browse/romanian-wordnet-30/4611a43efb6811e2a8ad00237df3e3580b6b50d1111c4a6292694bded91d5c14/ **** If you would like a direct download of the API containing the RoWordNet xml file, please download them both from :...
    Downloads: 0 This Week
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  • 3

    bioNerDS

    Bioinformatics Named Entity Recogniser for Databases and Software

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  • 4
    BenchLab is a Web Application benchmarking framework using real web browsers.
    Downloads: 4 This Week
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  • 5

    sgmweka

    Weka wrapper for the SGM toolkit for text classification and modeling.

    Weka wrapper for the SGM toolkit for text classification and modeling. Provides Sparse Generative Models for scalable and accurate text classification and modeling for use in high-speed and large-scale text mining. Has lower time complexity of classification than comparable software due to inference based on sparse model representation and use of an inverted index. The provided .zip file is in the Weka package format, giving access to text classification. Other functions are usable through...
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    Downloads: 30 This Week
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  • 6
    SILA

    SILA

    Automated bacterial and archaeal genome annotation system

    SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801
    Downloads: 0 This Week
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  • 7

    VnDP

    A Vietnamese dependency parsing toolkit

    VnDP is a Vietnamese dependency parsing toolkit which integrates a pre-trained parsing model and a pre-trained POS tagging model. The parsing model was trained on our VnDT Vietnamese dependency Treebank which was automatically converted from the Vietnamese constituent Treebank. See more details in VnDP's website at http://vndp.sourceforge.net/
    Downloads: 0 This Week
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  • 8

    jarta

    A Java library to model and fit ARTA processes.

    Downloads: 0 This Week
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  • 9
    DualSPHysics

    DualSPHysics

    C++/CUDA/OpenMP based Smoothed Particle Hydrodynamics (SPH) Solver

    ...The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes based on the SPHysics FORTRAN project (www.sphysics.org) that are designed to deal with real-life engineering problems and are provided along with pre-compiled binaries and source for Windows/Linux/Unix as well as a number of example test cases.
    Downloads: 4 This Week
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  • 10
    This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/
    Downloads: 0 This Week
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  • 11
    Entity recognition and normalization software for biomedical text
    Downloads: 1 This Week
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  • 12
    For the process of RDF dataset transformation the R2R Framework specifies a mapping language and an implementation in form of a a Java API. More infos at: http://www4.wiwiss.fu-berlin.de/bizer/r2r/
    Downloads: 4 This Week
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  • 13
    RDKit

    RDKit

    Open-Source Cheminformatics and Machine Learning

    A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and...
    Downloads: 9 This Week
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  • 14
    Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
    Downloads: 0 This Week
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  • 15

    erne

    ERNE - Extended Randomized Numerical alignEr

    We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners),
    Downloads: 0 This Week
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  • 16
    SuperCollider

    SuperCollider

    Real-time audio synthesis engine and music programming language

    N.B. SuperCollider is now hosted at GitHub, and the most recent versions can be downloaded from there. http://supercollider.github.io A real time audio synthesis engine, and an object-oriented programming language specialised for music. SuperCollider was created in 1996 by James McCartney, now (since version 3) released as free software.
    Downloads: 9 This Week
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  • 17
    RAPSim - Microgrid Simulator

    RAPSim - Microgrid Simulator

    An easy to use GUI enables electric source and grid simulation.

    RAPSim (Renewable Alternative Powersystems Simulation) is a free and open source micro-grid simulation framework for better understanding of power flowing behavior in smart microgrids with renewable sources. It is able to simulate grid-connected or standalone microgrids with solar, wind or other renewable energy sources. The proposed software calculates the power generated by each source in the microgrid and then it conducts a power flow analysis. This software is helpful for optimal...
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    Downloads: 1 This Week
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  • 18

    Bamformatics

    Toolkit and GUI for sequencing data analysis

    The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.
    Downloads: 0 This Week
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  • 19
    QueueSimulator

    QueueSimulator

    Simulator of G/G/k queue systems used in computer networks.

    QueueSimulator is a free software which aims to simulate primarily G/G/k queueing systems that are used in computer networks. But it can be used to simulate practically any stable queue system.
    Downloads: 0 This Week
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  • 20
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  • 21
    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (Java source code and bin)

    A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns)
    Downloads: 0 This Week
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  • 22
    ImagingBook

    ImagingBook

    Java source code for image processing books by Burger & Burge

    NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************
    Downloads: 0 This Week
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  • 23

    Econball

    Equation of stock trading simplified to game of moving resizing balls

    The econ theory is the value of buy and sell are usually equal, at whatever free market price at the time, so if we trade between 2 things, holding the total of those 2 equal eachother, then you can buy without anyone selling, or sell without anyone buying. Just change from one equal valued type to the other, and the total of all the A's and all the B's are scaled instantly to be the same amounts. Those who change to the majority side lose, and those who change to the minority side win,...
    Downloads: 0 This Week
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  • 24
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
    Downloads: 1 This Week
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  • 25
    IAP.G2P

    IAP.G2P

    IAP - the Integrated Analysis Pipeline

    The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
    Downloads: 2 This Week
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