Search Results for "sql command line" - Page 25
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Showing 2376 open source projects for "sql command line"
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Stop Storing Third-Party Tokens in Your DatabaseRolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
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Streamline Azure Security with Palo Alto Networks VM-SeriesImprove your security posture and reduce incident response time. Use the VM-Series to natively analyze Azure traffic and dynamically drive policy updates based on workload changes.
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diasim
Dialogue Similarity
Tools for calculating similarity (including lexical and syntactic) between speakers in dialogue, across standard and randomised corpora. -
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Primes
Calculate primes by using extremely fast sorting
This project considers the problem of calculating primes as a sorting problem. It includes the most efficient tree-based sorting algorithm that is possible and shows that finding a new prime can be done by sorting the differences between the previous primes in the right way. Unfortunately it has turned out that going this way is even more slowly than trying to find primes by brute force. So it can only be used as a test with heavy load for the sorting algorithm, which can be used for... -
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MCCCS
Multi Channel Classification and Clustering
Here we present an image-based Multi Channel Classification and Clustering System (MCCCS). It is an generalized, script-based classification system for processing various kinds of image data. Due to the modular design, individual processing-components can be easily adapted, extended or exchanged by own extensions. See project website for installation instructions. -
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MuffinEC
Multi-technology, INDEL aware error correction for NGS data
MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation. We are developing the 2nd version of MuffinEC. The beta version is already available... -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
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denovo_hit
Outputs potential denovo variants from VCF given pedigree information.
Program takes variants calls and determines if the call is novel for a child compared to parents. Program can handle both annotated and unannotated VCF files, however output file is not compatible with GATK's snpEff, so you should annotate prior to using denovo_hit. Usage: ./denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab... -
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A broad collection of command-line-interface tools for performing machine learning operations. Each tool is a thin wrapper around functionality in a well-documented C++ class library. Waffles tools are designed to be simple, script-friendly, and to
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Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic loci.
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CSV Transformer
transforms xml to csv
The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any... -
Forever Free Full-Stack Observability | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
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EV3Utils
LEGO EV3 Utilities and Assembler
EV3Utils are Communication and Assembler utilities written in JAVA for working with the LEGO Mindstorms EV3 from Linux. A command line interface is provided which can be used to up- or download projects as well as assemble new bytecode files. Communication with the brick is currently limited to USB-only, but other transports should be easy to add. The assembler supports all of the functionality of the one provided by LEGO, but uses a slightly different syntax and supports far more error checking. ... -
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WODA solver
A finite volume groundwater simulator
WODA (Well Outline and Design Aid) is a groundwater simulator developed at the Group for Numerical Analysis, Jaroslav Cerni Institute, Belgrade, Serbia. WODA does not have its own graphical user interface, but it can work with groundwater models constructed using the freely available Lizza interface, http://www.bioirc.ac.rs/index.php/groundwater-flow-software. -
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jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded. The primary repository is on github (dmcennis) which pushes to this projects github repository.
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PLP
Powerfull pre-processor
Powerful Verilog Preprocessor. PLP stands for Perl Pre-processor. Perl is used as "control language" that is embedded in the Verilog code (or any other code) to generate code on the fly. It is used commonly as a Verilog pre-processor but can be used with any target/output language (C, C++, Java, VHDL, plain text etc) -
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RTLSDR Scanner
A cross platform Python frequency scanning GUI for rtl-sdr
A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer... -
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.
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GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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RandomLib
Random number library
RandomLib is a C++ interface to the Mersenne Twister random number generator MT19937 and to the SIMD-oriented Fast Mersenne Twister random number generator, SFMT19937. For documentation, visit http://randomlib.sf.net -
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CRISPR-Offinder
a CRISPR guide RNA design and off-target searching to
...Besides, CRISPR-offinder can find and rank the candidate sgRNAs in genome by off-target sites number, and also can be used to design single or paired-gRNAs. CRISPR-offinder is freely available as a command-line program or accessible via our website. Availability: CRISPR-offinder is freely available at http://crispr-offinder.com/ or http://crispr.igenetech.com/. -
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iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. ...
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Notice: RMG-Java is no longer in active development. Please find the latest version written in Python at http://reactionmechanismgenerator.github.io To see the website o the old Java version of RMG, visit http://rmg.sourceforge.net RMG (Java version) is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).
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(NCS) NEQUIM Contact System
Tool for analyze of interactions in ligand-protein complexes
NEQUIM Contact System (NCS) is a system to generate and analyze interaction vectors of protein-ligand complexes. Core features include multiple views of vectors, multiple selection options, cluster analysis and generation of interaction vector model. The input could be from PDB format or from files generated by automatic docking softwares AutoDock/Vina or Surflex. -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
