Showing 806 open source projects for "processing"

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  • 1
    Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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    Downloads: 460 This Week
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  • 2
    PyMca
    Stand-alone application and Python tools for interactive and/or batch processing analysis of X-Ray Fluorescence Spectra. Graphical user interface (GUI) and batch processing capabilities provided.
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    Downloads: 170 This Week
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  • 3
    Gwyddion

    Gwyddion

    Scanning probe microscopy data visualisation and analysis

    A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.
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    Downloads: 1,915 This Week
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  • 4
    Free DELTA

    Free DELTA

    Software tools for processing taxonomic descriptions in DELTA format

    The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.
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    Downloads: 221 This Week
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  • 5
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    ...The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). ...
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    Downloads: 9 This Week
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  • 6
    itom

    itom

    itom - an Open Source Measurement, Automation and Evaluation Software

    ...Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods. Additionally, the rapid prototyping of modern measurement and inspection setups requires a system, where parameters or components can easily be changed at runtime, necessitating the availability of an embedded scripting language. Finally, when operating a measurement system, it is also desirable to extend the graphical user interface by system adapted dialogs and windows. ...
    Downloads: 7 This Week
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  • 7
    AudeLA
    AudeLA is a TCL extension aimed at providing amateur astronomers with image processing, telescope controling, ccd camera driving, and various astronomical algorithms. Web site : https://sourceforge.net/p/audela/wiki/fr_accueil Web site : https://sourceforge.net/p/audela/wiki/en_welcome
    Downloads: 8 This Week
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  • 8
    Armadillo

    Armadillo

    fast C++ library for linear algebra & scientific computing

    * Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads: http://arma.sourceforge.net/download.html * Documentation: http://arma.sourceforge.net/docs.html * Bug reports: http://arma.sourceforge.net/faq.html * Git repo: https://gitlab.com/conradsnicta/armadillo-code
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    Downloads: 2,384 This Week
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  • 9
    This program makes PNG and/or GIF graphics from DVI files. It produces high-quality images while its internals are tuned for speed. It supports PK, VF, PostScript and TrueType fonts, color, PostScript inclusion, bitmap inclusion, and has CJK support
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    Downloads: 56 This Week
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  • 10
    TurboWG
    The project is an update of the work by the OpenFOAM Turbomachinery Working Group, that was initiated at the Second OpenFOAM Workshop in Zagreb, June 2007. Objectives: * Develop OpenFOAM and FOAM-extend extensions for turbomachinery applications, including pre-processing, solution methods, and post-processing. * Provide tutorials on how to produce accurate results using OpenFOAM and FOAM-extend in turbomachines. * Distribute relevant validation test cases and corresponding OpenFOAM and FOAM-extend applications. * Provide a test-harness for new releases of OpenFOAM and FOAM-extend. * Provide Best Practice Guidelines for CFD in turbomachines. ...
    Downloads: 5 This Week
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  • 11
    Madagascar
    Madagascar is a software package for geophysical data processing and reproducible numerical experiments. The package mission is to provide a convenient environment for researchers working with digital image and data processing in geophysics and related fields.
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    Downloads: 41 This Week
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  • 12
    SAGA GIS
    SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting environments (shell scripts, Python, R, ...). ...
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    Downloads: 6,419 This Week
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  • 13
    ProStack

    ProStack

    ProStack - a platform for image processing and analysis

    ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio
    Downloads: 0 This Week
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  • 14
    An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).
    Downloads: 1 This Week
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  • 15
    QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC
    Downloads: 12 This Week
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  • 16

    Subread

    High-performance read alignment, quantification and mutation discovery

    The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.
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    Downloads: 249 This Week
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  • 17
    CPSeis is the open-source version of ConocoPhillips' former seismic processing system. Uses Fortran 90 and C/C++ layers for I/O. The new system was designed using an MPI-parallel model and works well on Linux clusters or on individual workstations.
    Downloads: 15 This Week
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  • 18
    GLTF/GLB Windows Shell Extension: This shell extension automatically adds thumbnail images to .glb files in Windows File Explorer and provides a right click menu option to generate a 3D preview image for .gltf files. Supports multi-file select and directory processing. Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255640 LAS/LAZ Pointcloud Windows Shell Extension: This "quick viewer" shell extension provides a Windows File Explorer right click menu option to quickly generate 3D preview images for large and small .las and .laz files. (Disclaimer: Processing time depends on compute hardware) Typical processing time for 100mb .las is about 2 seconds. 25mb .laz file process in about the same times. ...
    Downloads: 5 This Week
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  • 19
    BioXTAS RAW

    BioXTAS RAW

    Processing and analysis of Small Angle X-ray Scattering (SAXS) data.

    ...The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis (EFA) or the regularized alternating least squares (REGALS) methods. Active source code is now maintained on github: https://github.com/jbhopkins/bioxtasraw To install: Check the instructions available at: http://bioxtas-raw.readthedocs.io/en/latest/install.html and in the Files tab. ...
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    Downloads: 120 This Week
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  • 20
    HEALPix

    HEALPix

    Data Analysis, Simulations and Visualization on the Sphere

    Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files):...
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    Downloads: 149 This Week
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  • 21
    IM
    IM is a toolkit for Digital Imaging. IM is based on 4 concepts: Image Representation, Storage, Processing and Capture. The main goal of the library is to provide a simple API and abstraction of images for scientific applications.
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    Downloads: 25 This Week
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  • 22
    Agena

    Agena

    Agena is an interpreted procedural programming language.

    Agena is an easy-to-learn procedural programming language designed for science, scripting, and many other applications. Binaries are available for Windows, Linux, Solaris, OS/2, Mac OS X, Raspberry Pi and DOS.
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    Downloads: 158 This Week
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  • 23
    iceWing
    iceWing is a graphical plugin shell optimized for, but not limit to, image processing and vision system development. Predefined or self-written plugins operate hierarchically on data provided by other plugins and can also generate new data-streams. An important predefined plugin can read images and videos from disk in various formats, from grabber-hardware, e.g. V4L2-devices or FireWire, and also from external, network wide processes.
    Downloads: 0 This Week
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  • 24
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 154 This Week
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  • 25
    Insight Toolkit
    Insight Toolkit (ITK). ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions. New location: https://github.com/InsightSoftwareConsortium/ITK
    Downloads: 0 This Week
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