Showing 2604 open source projects for "java class"

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  • 1
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 21 This Week
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  • 2
    Virtual Math Teams
    The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).
    Downloads: 0 This Week
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  • 3
    KAnalyze

    KAnalyze

    DNA/RNA Sequence K-mer Toolkit

    KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API.
    Downloads: 0 This Week
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  • 4
    Opt4J

    Opt4J

    Modular Java framework for meta-heuristic optimization

    Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary...
    Downloads: 0 This Week
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  • 5
    Flamethyst is a flame fractal renderer written in java. It generalizes the classical algorithm in several ways, and support most features of Apophysis .flame files.
    Downloads: 0 This Week
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  • 6
    GEDI: Groundtruthing Editor
    GEDI (Groundtruthing Environment for Document Images) is a highly configurable document image annotation tool. Its basic structure involves two types of files, an Image file, and a corresponding .XML file in GEDI format. LAMP Univ of MD, College Park, MD
    Downloads: 0 This Week
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  • 7
    ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
    Downloads: 0 This Week
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  • 8
    BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
    Downloads: 0 This Week
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  • 9
    Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
    Downloads: 0 This Week
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  • 10
    BenchLab is a Web Application benchmarking framework using real web browsers.
    Downloads: 12 This Week
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  • 11
    Entity recognition and normalization software for biomedical text
    Downloads: 13 This Week
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  • 12
    DualSPHysics

    DualSPHysics

    C++/CUDA/OpenMP based Smoothed Particle Hydrodynamics (SPH) Solver

    DualSPHysics is based on the Smoothed Particle Hydrodynamics method and can be downloaded from the official website (www.dual.sphysics.org). The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes based on the SPHysics FORTRAN project (www.sphysics.org) that are designed to deal with real-life engineering problems and are...
    Downloads: 5 This Week
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  • 13

    sgmweka

    Weka wrapper for the SGM toolkit for text classification and modeling.

    ...Has lower time complexity of classification than comparable software due to inference based on sparse model representation and use of an inverted index. The provided .zip file is in the Weka package format, giving access to text classification. Other functions are usable through either Java command-line commands or class inclusion into Java projects.
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    Downloads: 19 This Week
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  • 14
    Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
    Downloads: 5 This Week
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  • 15
    GLORIA Project

    GLORIA Project

    GLObal Robotic-telescopes Intelligent Array for e-Science

    GLORIA stands for "GLObal Robotic-telescopes Intelligent Array". GLORIA will be the first free and open- access network of robotic telescopes of the world. It will be a Web 2.0 environment where users can do research in astronomy by observing with robotic telescopes, and/or analyzing data that other users have acquired with GLORIA, or from other free access databases, like the European Virtual Observatory (http://www.euro-vo.org).
    Downloads: 0 This Week
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  • 16
    RDKit

    RDKit

    Open-Source Cheminformatics and Machine Learning

    A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and...
    Downloads: 18 This Week
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  • 17
    RAPSim - Microgrid Simulator

    RAPSim - Microgrid Simulator

    An easy to use GUI enables electric source and grid simulation.

    RAPSim (Renewable Alternative Powersystems Simulation) is a free and open source micro-grid simulation framework for better understanding of power flowing behavior in smart microgrids with renewable sources. It is able to simulate grid-connected or standalone microgrids with solar, wind or other renewable energy sources. The proposed software calculates the power generated by each source in the microgrid and then it conducts a power flow analysis. This software is helpful for optimal...
    Downloads: 2 This Week
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  • 18
    SuperCollider

    SuperCollider

    Real-time audio synthesis engine and music programming language

    N.B. SuperCollider is now hosted at GitHub, and the most recent versions can be downloaded from there. http://supercollider.github.io A real time audio synthesis engine, and an object-oriented programming language specialised for music. SuperCollider was created in 1996 by James McCartney, now (since version 3) released as free software.
    Downloads: 13 This Week
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  • 19
    QueueSimulator

    QueueSimulator

    Simulator of G/G/k queue systems used in computer networks.

    QueueSimulator is a free software which aims to simulate primarily G/G/k queueing systems that are used in computer networks. But it can be used to simulate practically any stable queue system.
    Downloads: 0 This Week
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  • 20
    Yali is "Yet Another LCN Interface". "Local Control Network" (LCN) is a building control and automation system, a trademark of Issendorff GmbH. Yali opens the door for MAC and Linux users to control their LCN installation via LAN.
    Downloads: 0 This Week
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  • 21

    Econball

    Equation of stock trading simplified to game of moving resizing balls

    The econ theory is the value of buy and sell are usually equal, at whatever free market price at the time, so if we trade between 2 things, holding the total of those 2 equal eachother, then you can buy without anyone selling, or sell without anyone buying. Just change from one equal valued type to the other, and the total of all the A's and all the B's are scaled instantly to be the same amounts. Those who change to the majority side lose, and those who change to the minority side win,...
    Downloads: 0 This Week
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  • 22
    IAP.G2P

    IAP.G2P

    IAP - the Integrated Analysis Pipeline

    The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
    Downloads: 2 This Week
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  • 23

    diasim

    Dialogue Similarity

    Tools for calculating similarity (including lexical and syntactic) between speakers in dialogue, across standard and randomised corpora.
    Downloads: 0 This Week
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  • 24
    The Open Modeling Interface and Environment (OpenMI) defines a standardized way to exchange data between computational models that run simultaneously. OpenMI aims to enhance process interaction representation in integrated environmental modelling.
    Downloads: 4 This Week
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  • 25

    JMGF

    Java implementation for the Mascot Generic File Format (MGF).

    JMGF is a lightweight framework for handling MGF files. It supports reading, writing and parsing of MGF files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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