Search Results for "https c lib" - Page 13
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Showing 496 open source projects for "https c lib"
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HiLive
Realtime Alignment of Illumina Reads - old repo
Please note that this repo is outdated! Please find the latest version of HiLive here: https://gitlab.com/SimonHTausch/HiLive -
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UPDATE March 14, 2018 Repository and tracking officially moved to github. https://github.com/opticks-org/opticks Sourceforge mailing lists are still in use. Opticks is an open source remote sensing application and development framework.
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Flexbar
flexible barcode and adapter removal for sequencing platforms
Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for... -
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Simox has moved to gitlab. Please update your URLs: https://gitlab.com/Simox/simox A platform-independent robot simulation, motion and grasp planning toolbox consisting of three modules: VirtualRobot to simulate and visualize robots, Saba the sampling-based motion planning library and GraspStudio for grasp planning.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be... -
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Madeline 2.0 Pedigree Drawing Engine
Madeline 2.0 Pedigree Drawing Engine (PDE)
The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. PLEASE NOTE THAT as of 2015.09.30, the most current Madeline source code tree is now maintained on GITHUB at https://github.com/piratical/Madeline_2.0_PDE . -
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libznz with zindex
This is a fast version of libznz used in NIfTI C library
This library provides notable speed-up for seeking in large compressed NIfTI files. It is compatible with the libznz interface which is part of NIfTI C library to handle multidimensional (mostly MRI) images. Only the replacement of the currently available libznz library is necessary. To reach the expected speed-up the compressed NIfTI data has to be indexed with the included tool. To compile the binaries, the sources available in this project have to be replaced with the ones in znzlib folder of project https://sourceforge.net/projects/niftilib/files/nifticlib/nifticlib_2_0_0/ and the nifticlib has to be compiled. -
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Repository moving to https://github.com/cmendl/fermifab ! A quantum physics toolbox for small fermionic systems. Keywords: quantum mechanics, reduced density matrices, Slater determinants, second quantization, creation and annihilation operators
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SEWOL: Security-oriented Workflow Lib
Java Library for workflow handling
SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following... -
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PNGwriter
Easy plotting of images pixel by pixel!
Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than 0.5.5. ... -
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LDhat
Estimate Recombination Rates from Population Genetic Data
LDhat is a package written in the C language for the analysis of recombination rates from population genetic data. This package has migrated to github: https://github.com/auton1/LDhat -
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Open source development for FluidEarth (https://fluidearth.net/default.aspx) which supports the OpenMI Standard (http://openmi.sourceforge.net) Here are OpenMI Association approved applications.
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A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
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galprop
Cosmic-ray propagation and emission processes
Software for cosmic-ray propagation, gamma-rays, synchrotron. Current version (r2766) includes * accurate propagation scheme * polarized synchrotron * free-free emission and absorption * new convection models * anisotropic diffusion * primary positrons * free-escape boundary conditions * new hadronic gamma-ray production models * new injection spectral breaks * upwards compatible with latest HEALPix * improved HEALPix skymap format * full reference output for a sample run *... -
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1.
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Ichnaea
Performance Timing Tools
Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and... -
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clibsedml
C library for SED-ML
This project has migrated to GitHub (https://github.com/flintproject/clibsedml). -
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detectIR
Detection of Perfect and Imperfect Inverted Repeats
detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please visit the Wiki page of this website. [4] detectIR Q&A For Q&A, please visit the Blog page of this website... -
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The CML (Configurable Math Library) is a free, open-source C++ vector, matrix, and quaternion math library designed for use in games, graphics, computational geometry, and related applications. Please note: the CML source has moved to GitHub: https://github.com/demianmnave/CML
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Muninn
A software package for estimating generalized ensemble weights in Mark
...The package is implemented in C++ and has a convenient interface. -
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The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. WE HAVE MOVED! Very old (unsupported) stable releases can still be found here, but the new repository is at https://github.com/CGNS
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YAGY
Computer calculations made easy
Yagy is a (yet another) Graphical user interface for Yacas, a (yet another) Computer Algebra System. NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. -
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This project has now moved to bitbucket!!! https://bitbucket.org/Teknomancer/nopf Sourceforge won't let me delete it from here! WARNING TO ALL!! Don't ever create a project on sourceforge! they will not let you delete it!!! Go to other hosting providers that are much nicer!!!
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU.... -
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Billiard 3D Project
Billiard table simulator
It could help you to carry out numerous experiments on the billiard table. ATTENTION! X Window System, GLUT, OpenAL are required (https://stackoverflow.com/questions/3907064/installing-opengl-and-openal-in-ubuntu)
