Search Results for "framework" - Page 11
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Showing 868 open source projects for "framework"
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Total Network Visibility for Network Engineers and IT ManagersThis means every device on your network, and every interface on every device is automatically analyzed for performance, errors, QoS, and configuration.
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SEPIA: Security-oriented PN Framework
Petri net framework for security related modeling and reasoning.
SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and... -
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parSRA
Portable Framework for the Parallel Execution of Short Read Aligners
parSRA is a framework to execute short read aligners on compute clusters. It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration file allows the users to parallelize the execution of existing SRA tools without the need to modify the source code of parSRA or the aligner. -
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Pheno Analysis is a sequential data assimilation framework for use with prognostic phenology models. It uses MODIS satellite data to constrain model parameters and states.
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.Net (C#) version of the jMetal framework (http://jmetal.sourceforge.net)
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Job Evaluation and Talent Management SoftwareEncompassing Visions (ENCV), industry-leading job evaluation and pay equity software, is the best choice for organizations requiring transparent, comprehensive, and objective Job Evaluation software designed to help them ensure equal pay for work of equal value.
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...
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Graficas 2D is an opensource library for plotting 2D functions. It's compatible with .NET Framework and Mono
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. -
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Aquila
Software Architecture for Cognitive Robotics
Aquila 2.0, an open-source cross-platform software architecture for cognitive robotics that makes use of independent heterogeneous CPU-GPU modules with loosely coupled dynamically generated graphical user interfaces. -
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Catania Science Gateway Framework
Framework based on standards to build Science Gateways
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The FxEngine is an Open C++ Framework under LGPL license. The FxEngine Framework simplifies the plugin architecture for the data flow processing. It provides a full control to the plugin architecture for applications that require custom solutions.
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MZmine 2
A framework for differential analysis of mass spectrometry data
MZmine 2 is a framework written in Java for differential analysis of mass spectrometry data. -
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steam-sim
An accurate, scalable, and energy-aware simulator for WSNs
...The time annotation engine annotates the C source code used for simulation with the timing information as if the code is run on a microcontroller. The annotation process is fully automated. Hardware models are developed using the PAWiS framework and reflect the timing, functionality, and energy-consumption of real-world hardware such as a CC2420 radio transceiver. Network behavior in terms of wireless channel models are provided by the PAWiS and the MiXiM framework. STEAM-Sim is an extension to the PAWiS and MiXiM framework. The underlying simulator is OMNeT++. ... -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
...pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
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fitGCP
Fitting genome coverage distributions with mixture models
...Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147 -
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LexSub
A Lexical Substitution Framework
Lexical substitution framework for supervised all-words lexical substitution using delexicalized features. For a runnable (but GPL-licensed) version of LexSub, see LexSub-GPL (sf.net/p/lexsub/lexsub-gpl) -
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SAORS
OMNET++ implementation of framework for opportunistic protocols.
Up to now, OMNET++ and the INET and INETMANET frameworks do not include an opportunistic routing protocol implementation. A careful examination reveals that there are three very distinctive stages in the decision procedure of every opportunistic routing protocol. SAORS takes advantage of this observation and incorporates it in the system architecture. It is based on the DYMO ad-hoc routing protocol. SAORS provides the necessary functions for the development of opportunistic schemes such as... -
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DSPatcher
Cross-Platform Graphical Tool for DSPatch
... * DSPatcher - A graphical tool based on QtPatcher for building DSPatch circuits. *See also:* DSPatch ( https://github.com/MarcusTomlinson/DSPatch ): A powerful C++ dataflow framework. DSPatchables ( https://github.com/MarcusTomlinson/DSPatchables ): A DSPatch component repository. -
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neuranep
Neural Network Engineering Platform
A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. NeuraNEP emulates a distributed processing environment capable of handling millions of microthreads in parallel, for example running neural networks with millions of spiking cells. Microthreads are general processing elements that can also represent non-neural elements, such as cell populations, extracellular space, emulating sensory activity, etc. ... -
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Automatic cell lineage reconstruction
Automatic segmentation and tracking for 3D time-lapse microscopy
From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ... -
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SOAPdenovo-Trans
A de novo transcriptome assembler.
Latest Codes on GitHub: https://github.com/aquaskyline/SOAPdenovo-Trans SOAPdenovo-Trans is a de novo transcriptome assembler inherited from the SOAPdenovo2 framework, designed for assembling transcriptome with alternative splicing and different expression level. The assembler provides a more comprehensive way to construct the full-length transcript sets compare to SOAPdenovo2. -
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OOMMF magnetoelastic extension
Incorporates the magnetoelastic energy in OOMMF simulations.
OOMMF magnetoelastic extension incorporates the magnetoelastic energy to micromagnetic simulations with OOMMF (Object-Oriented Micromagnetic Framework). The extension provides additional Oxs extensible classes, in which you can specify the elastic strain or the displacement along with the magnetoelastic coefficients. Spatially-nonuniform, time-varying strain can be specified either with Tcl scripts or file lists and the effective magnetoelastic field and energy is computed at each simulation step. -
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ISO GrAF
Experimental Java library for reading and writing GrAF/XML files.
The Graph Annotation Framework (GrAF) models linguistic annotations using a data model based on Graph theory and algorithms. The GrAF standard is a work product of ISO TC37SC4 Working Group 1. This Java library is NOT part of the GrAF standard and standoff annotation files produced by the library may not be GrAF compliant. -
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arcgis-viewer-flex
Source code for ArcGIS Viewer for Flex - a great application framework
The ArcGIS Viewer for Flex is a customizable, open-source framework for building rich GIS web applications using Adobe Flex and ArcGIS Server. It provides a modular structure with built-in map tools, widgets, and themes. Users can create interactive maps with minimal coding and extend the viewer with custom widgets for tasks like geocoding, editing, and routing. It was widely used before HTML5-based viewers became standard. -
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StatAlign
An extendable statistical multiple alignment tool.
StatAlign is an extendable software package for Bayesian analysis of Protein, DNA and RNA sequences. Multiple alignments, phylogenetic trees and evolutionary parameters are co-estimated in a Markov Chain Monte Carlo framework, allowing for reliable measurement of the accuracy of the results. This approach eliminates common artifacts that traditional methods suffer from, at the cost of increased computational time. These artifacts include the dependency of the constructed phylogeny on a single (probably suboptimal) alignment and bias towards the guide tree upon which the alignment relies. ...
