Search Results for "command line tools"
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Showing 482 open source projects for "command line tools"
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J2ObjC
A Java to iOS Objective-C translation tool and runtime
J2ObjC is an open-source command-line tool from Google that translates Java source code to Objective-C for the iOS (iPhone/iPad) platform. This tool enables Java source to be part of an iOS application's build, as no editing of the generated files is necessary. The goal is to write an app's non-UI code (such as application logic and data models) in Java, which is then shared by web apps (using GWT), Android apps, and iOS apps. -
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Community Z Tools
Tool support for the Z formal notation
Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt -
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Library of Java code to interact with the data-recording formats (RPFITS and PSRFITS) used at the Australia Telescope National Facility (ATNF). It also provides tools for extracting metadata from the files for supply to Virtual Observatory instances.
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GeographicLib
Geographic library
GeographicLib is a small C++ library for: geodesic and rhumb line calculations; conversions between geographic, UTM, UPS, MGRS, geocentric, and local cartesian coordinates; gravity (e.g., EGM2008) and geomagnetic field (e.g., WMM2020) calculations. -
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Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.
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RPNCalc
RPNCalc - The command line Reverse Polish Notation (RPN) Calculator
RPNCalc is the command-line based Reverse Polish Notation (RPN) calculator. RPN calculators make it very simple to do complex calculations, especially if there are parentheses involved. I've created a User Guide (https://frossm.github.io/RPNCalc-UserGuide) to do a better job of explaining how to use RPNCalc than the old readme.md file, which was getting really long. -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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Java-Enigma
Enigma Encryption Simulator in Java
This program is an offline and stand-alone Java application which simulates the Enigma encryption machine that was used during World War II. -
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BRL-CAD
Open Source Solid Modeling CAD
BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools. -
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Grassroots DICOM
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets. -
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In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
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COBOL copybook to XML converter
Converts cobol copybooks to Xml/Java objects
CB2XML (CopyBook to XML) is a COBOL CopyBook to XML converter written in Java and based on the SableCC parser generator. This project includes utilities to convert an XML instance file into its COBOL copybook equivalent string buffer and vice versa. Source is now available in GitHub: https://github.com/bmTas/cb2xml -
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006. During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
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gVirtualXRay
Virtual X-Ray Imaging Library on GPU
gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave. -
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ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. ATC Online Alpha: https://advantrigoncalc.sourceforge.io/atc/ More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by... -
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AMBIT:Chemical Structure DB&Web Service
Chemical structures database & machine learning with web services API
...Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases. -
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JDiskMark
Java Disk Benchmark Utility
JDiskMark is a powerful and versatile disk benchmarking tool written in Java, designed to help you accurately measure the performance of your storage devices across different operating systems. Whether you're testing HDDs, SSDs, or network drives, JDiskMark provides reliable insights into your disk's read and write speeds. ubuntu/debian: https://sourceforge.net/projects/jdiskmark/files/jdiskmark_0.7.0_amd64.deb/download rhel /... -
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Java multiprecision calculator
Multiprecision calculator
Multipresicion calculator, based on Bigdecimal Java class . It has a library (BigMath) that makes calculations with Bigdecimal. It has also an expression parser to parse the user input. It allows you to store user defined variables and functions . You can operate with them to be used for calculations or for creating new functions with composition. With the new version, you can also calculate the derivative of a function. JDK-17 compatibility You can find more about it at this web... -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
...A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/). BEFORE DOWNLOADING: The green button directs to the jar for command line usage. See the wiki for the GUI and other options -
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The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments for bacterial and archaeal 16S rRNA sequences, fungal LSU and fungal ITS sequences, with confidence estimates for each assignment. More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR....
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Dike-ED
Simulator for medical emergency departments
Discrete-event simulator for medical emergency department resource allocation. -
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polynomial-roots-calculation
Application for calculating the real roots of a polynomial
Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials...
