Search Results for "linux command" - Page 6
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Showing 457 open source projects for "linux command"
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Network Analyzer
Analyze the network carateristics like Delay, Jitter, Packet loss etc.
This software is a very simple network analyzer. When you click the start button, it will send a configurable stream of UDP packets to a host. (The receiving host is then required to echo all the packets back to the sender, which can be easily done via iptables rule under linux). Once the eched packets arrives back to the sender, the analyzer will calculate all the related statistics like, packet loss, jitter throughput etc... NOTE: in order to receive the echo packets you must... -
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JUnit Execution & Report Generation Tool
Runs JUnit Test cases and generate HTML report, keeps past run history
This tool pulls all JUnit testcases from the class path and run them all. After completion of test case execution it populates the result in database tables. A report tool fetch the result data from database and produce an HTML report. Highlights of this tool - No coding effort is required from developer to integrate existing JUnit test cases. They just need to put their test case folder to the class path - Since it keep the test result data in a database, it can keep history of... -
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vipR is a program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms. Information on this and other projects can be found on: http://www.altmann.eu
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
...It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by iTRAQ-8plex for testing and a user's manual. If you have any question about IQuant, please contact me: wenbo@genomics.cn. The source code of IQuant can be found here "https://sourceforge.net/p/iquant/code/". -
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO,... -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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KeplerDB
Timeseries databases management system
KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling). -
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PatchCatcher
Software for Patchwriting Detection
PatchCatcher uses suffix arrays to detect common types of patchwriting among scientific papers. -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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PHDL
An HDL alternative to PCB graphical schematic capture tools.
PHDL is an HDL that functions as an alternative to mainstream graphical schematic capture tools. The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool. VHDL revolutionized how FPGA designs and digital logic... -
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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FALCON - Text Search Java Project
JSON based text search Java Project
----------------- - What is it? - ----------------- The "Falcon Search" is a JAVA API and tool to search inside the documents. It was originally started to search the content in pdf files under the project "HAWK Search". Searching with this tool is query-based not word-based as in most of the document search tools OR document readers. It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language... -
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Computing with units
Calculator that takes care of measurement units.
Java program for computations with values expressed in terms of physical or other units. Supports complicated mathematical expressions and user-defined functions. Invoked from scripts, line command, or as GUI. Extensive units data base. -
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Bermuda Text-to-Speech
This project includes basic NLP and DSP techniques for Text-to-Speech
See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro. -
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.
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Hilbert II - QEDEQ
proof verifier for mathematical proofs and documentation generator
In the tradition of Hilbert's program we create a formal correct (checkable by a proof verifier) but readable (like an ordinary LaTeX textbook) mathematical knowledge base which is freely accessible within the internet. Logic and set theory started. -
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Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
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ktree
clustering, machine learning, algorithms
This project has moved to github at http://lmwtree.devries.ninja. -
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HAWK - PDF Text Search Java Project
No more support for this project - TAKE A LOOK AT FALCONSEARCH
No more support for this project - TAKE A LOOK AT FALCONSEARCH "https://sourceforge.net/projects/falcontextsearch/"
