Showing 614 open source projects for "linux android tool"

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  • 1
    Mass-Up

    Mass-Up

    MALDI-TOF data analysis tool

    Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data.
    Downloads: 1 This Week
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  • 2
    JAS-mine

    JAS-mine

    Toolkit for agent-based & dynamic microsimulation modelling

    JAS-mine is a Java platform that aims at providing a unique simulation tool for discrete-event simulations, including agent-based and microsimulation models. With the aim to develop large-scale, data-driven models, the main architectural choice of JAS-mine is to use whenever possible standard, open-source tools already available in the software development community. It has built-in utilities for communicating with an underlying relational database. In addition, the platform provides...
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  • 3
    DODDLE-OWL

    DODDLE-OWL

    a Domain Ontology rapiD DeveLopment Environment – OWL extension

    DODDLE-OWL is a domain ontology development tool for the Semantic Web. DODDLE-OWL makes reuse of existing ontologies and supports the semi-automatic construction of taxonomic and other relationships in domain ontologies from documents.
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  • 4
    Alevin2

    Alevin2

    Tool for the evaluation of ALgorithms for Embedding VIrtual Networks

    ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms.
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  • 5

    AntibiogramJ

    AntibiogramJ is a Java program for the reading of antibiogram-images

    AntibiogramJ is a Java program for the identification, measurement and categorisation of inhibition zones in antibiogram images captured with any device that incorporates a camera (including digital cameras and mobile phones). Citing AntibiogramJ: A. Alonso, C. Domínguez, J. Heras, E. Mata, V. Pascual, C. Torres, and M. Zarazaga. AntibiogramJ: a Tool for Analysing Images from Disk Diffusion Tests. Computer Methods and Programs in Biomedicine 143:159-169. 2017. DOI:...
    Downloads: 9 This Week
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  • 6

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
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  • 7

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 8

    TEESer

    Tool for Engineering Emergent Selforganizing bEhavioR

    Teeser is a java-based integration framework for engineering emergent self-organizing behavior in distributed systems. It contains tools for analysis, tuning, macroscopic probing and simulations of distributed systems. Library of tools can be extended and everybody is encouraged to provide and share its tools with the community. The main idea is to provide application designers ability to seamlessly use tools which are helpful to design self-organizing behavior. Designers can continue to...
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  • 9
    MathScythe

    MathScythe

    Math tool improving bundled calculations (like triangle properties)

    MathScythe improves bundled calculations, so you can enter what you have (like triangle's sides) and you get the rest without a blackboard and a bucket of broken chalk. App includes modules to calculate triangle, disk and directed angle's properties and it's still evolving and gaining new stuff.
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  • 10

    mirplant

    miRPlant: An Integrated Tool for Identification of Plant miRNA

    please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au).
    Downloads: 5 This Week
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  • 11
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
    Downloads: 0 This Week
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  • 12
    Effectopedia
    Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
    Downloads: 0 This Week
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  • 13
    Active Intelligence Server

    Active Intelligence Server

    Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting

    Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and...
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  • 14
    RadiationHelper

    RadiationHelper

    Alpha, Beta, Gamma measurements and Nuclide exposure

    RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique...
    Downloads: 1 This Week
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  • 15
    BEAST

    BEAST

    BEAST is a tool dedicated to assess political goals of woody bioenergy

    The BioEnergy Allocation and Simulation Tool (BEAST) is a tool dedicated to assess political goals of woody bioenergy production in the context of available biomass potentials and corresponding economic and ecological criteria on a regional level. It is a useful tool in participative decision making processes by iterative simulation and visualization of complex issues. BEAST is a data- and model-driven Decision Support System (DSS) evaluating woody biomass potentials from forests, hedges...
    Downloads: 0 This Week
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  • 16
    JLibModbus - Java Modbus Library

    JLibModbus - Java Modbus Library

    A modbus library implemented in Java.

    JLibModbus is an implementation of the Modbus protocol v1.1b in java language. The library supports the most popular communication libraries (jssc, rxtx, jSerialComm, purejavacomm, java comm api); Maven dependency: <dependency> <groupId>com.intelligt.modbus</groupId> <artifactId>jlibmodbus</artifactId> <version>1.2.9.7</version> </dependency> Implemented MODBUS functions: 0x01 Read Coils 0x02 Read Discrete Inputs 0x03 Read Holding Registers 0x04 Read Input...
    Downloads: 3 This Week
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  • 17

    The Sceptics Global Warming Analyzer

    Data Analyzer for Global Warming Sceptics

    A basic tool for importing, parsing, exporting, and analyzing the GHCN Weather Station Data.
    Downloads: 0 This Week
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  • 18
    Digital Logic Simulator (DiLoSim)

    Digital Logic Simulator (DiLoSim)

    Allows you to build your own circuits and test them

    With this software you will be able to build your own circuits and test them. You are allowed to use this easy-to-use tool for educational reasons. Run on Windows: - Install Java: https://java.com/en/download/ - Download the binaries - Open the jar-file with the java runtime Limitations: - Currently only German language supported. - This software requires Java 8 or above to work. Tested with OpenJDK & Oracle Java. For more information check out the project's source code...
    Downloads: 2 This Week
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  • 19
    Accent Tool Suite

    Accent Tool Suite

    Accent interfaces and controls systems through goals and policies

    Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances...
    Downloads: 0 This Week
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  • 20
    SportsTimer

    SportsTimer

    GUI tool to manage timer/round based sport events

    Downloads: 0 This Week
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  • 21

    ProMoVis

    A Tool for Control Structure Selection in Interconnected Processes

    ProMoVis is a software environment which can visualize a process system and analyze this interconnected system using the control structure selection methods. The tool s implemented as either a standalone software for industrial use or as a research version which can run within Matlab, both released under the Apache Open Source license. ProMoVis is not limited to the control structure selection problem as additional analysis methods can be added easily. For the re-use of existing models a...
    Downloads: 0 This Week
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  • 22
    OpenChrom
    OpenChrom is a tool for gas chromatography and mass spectrometry. The focus is to handle data files from different GC/MS and GC/FID systems and vendors. Its functionality and algorithms can be extended using a flexible plugin approach, based on Eclipse RCP.
    Downloads: 4 This Week
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  • 23
    N2A

    N2A

    Neurons to Algorithms - A neural modeling and simulation workbench

    "Neurons to Algorithms" (N2A) is a language for modeling neural systems, along with a software tool for editing models and simulating them. N2A is currently "alpha" software. The download provided on SF is for convenience to those who wish to preview the software. Please see our site on github for development status.
    Downloads: 0 This Week
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  • 24
    Universal Tag Finder

    Universal Tag Finder

    Is tool for query HTML content

    Universal Tag Finder is a tool to query against html content in the file system. For developers it allows to find out relevant elements during the troubleshooting and validating periods. Does not need to bother on massive regex to find out elements.
    Downloads: 0 This Week
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  • 25
    OptFlux
    OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.
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    Downloads: 28 This Week
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