Search Results for "open-shell" - Page 30
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Showing 4550 open source projects for "open-shell"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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xorlisp
Bit level lambda continuations and nothing else - Queue automata
Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a... -
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merlin is an user-friendly Java application that performs the reconstruction of genome-scale metabolic models for any organism that has its genome sequenced. It performs several steps of the reconstruction process, including the functional genomic annotations of the whole genome. Moreover, merlin includes tools for the identification and annotation of transport proteins encoding genes, as well as the generation of transport reactions for such carriers. Also, merlin includes tools for the...
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Krowface (Krowdix 3.0) is a simulation and implementation tool of social networks. To visualize and analyze the evolution of different social networks in real time. And the creation of a social network, configuring the parameters that define it. All this through a simple web interface and user friendly.
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MOEA Framework
A Free and Open Source Java Framework for Multiobjective Optimization
The MOEA Framework is a free and open source Java library for developing and experimenting with multiobjective evolutionary algorithms (MOEAs) and other general-purpose multiobjective optimization algorithms. The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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ConvertMAS
ConvertMAS converts Chemical File Formats mol, mol2 and sdf.
ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available... -
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SEPIA: Security-oriented PN Framework
Petri net framework for security related modeling and reasoning.
SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and... -
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eyeCure
eyeCure helps you cure your ill eyes, tired or intermittent exotropia.
eyeCure helps you cure your tired eyes or intermittent exotropia (exodeviation) by forcing you take rest regularly, if you don't feel good in eyes, or even have headache for too much computer usage. eyeCure did help me feel much better. Hope it helps you too. -
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It is a drug calculator. It is useful to pharmacists and doctors. You inform data and the app give to you the exact dose of a drug to this patient.
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JAGAL: Java Graph Library
Java graph library
JAGAL provides implementations for directed graphs (weighted and unweighted) and varoius types of transition systems as well as utils for graph traversal and modification. JAGAL builds upon the Java library TOVAL (located at http://sourceforge.net/p/toval). To use JAGAL, make sure the TOVAL library is on the build path. This library uses and encloses jGraphX (https://github.com/jgraph/jgraphx). A documentation for JAGAL can be found under http://doku.telematik.uni-freiburg.de/jagal. -
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SEWOL: Security-oriented Workflow Lib
Java Library for workflow handling
SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following... -
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Tellervo
Dendrochronological sample measurement, curation and analysis program
Tellervo enables users to measure, curate and analyse dendrochronological samples. It has a server/client architecture enabling users to collaborate within and between laboratories. -
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Lompad
Metatagging Editor for Learning Object Metadata (IEEE's LOM)
Lompad is a metatagging tool for learning object. It supports the IEEE-lom spec and SCORM, CANCORE and Normetic profiles. The interface is available in French, English and Spanish Consult the project's Web Site for more information. -
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand... -
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Interactive Web Physics is a Java, Web-based animation and problem designer tool. Anyone can quickly design mathematics or physics animations and simulations that run in a web browser. Unlike other solutions, no knowledge of programming is required.
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Arduino CNC Controller
APP for control a manual mill and obtain a CNC Mill
APP for Android 3.1 or greater to implement a CNC Controller that send orders using USB port to Arduino Mega 2560 R3 board to control 3 stepper motor to have a real CNC mill /// APP para Android 3.1 o superior para implementar un Controlador de CNC que envia ordenes usando el puerto USB a la placa Arduino Mega 2560 R3 para controlar 3 motores paso a paso para tener una fresadora de CNC real. -
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DbOutputter4RS
Plugin for Repast Simphony that supports storage of results in a DB
Insalling the plugin it is possible to direct data collected by data gatherers into a MySQL database. The database connection is configured via a wizzard. The whole process is similar to putting data to a file. -
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XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.
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MD PnP | OpenICE
Open Source Integrated Clinical Environment
As of 2015-06-23, this project may now be found at http://www.github.com/mdpnp/mdpnp. A prototype reference implementation of the standard for the Integrated Clinical Environment (ASTM F2761-2009) -
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Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
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Usul
Foundation bolt load for Pressure Vessel
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877,...
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Supporting software tools for mediated interpersonal awareness. Service oriented architecture, tools and applications that support communities to appropriate Pervasive Awareness applications. See http://www.astra-project.net/ for details.
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SuRankCo
Supervised Ranking of Contigs in de novo Assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y.... -
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This is software for display geographical maps, written on C++. It's small and simple library, which allow to use it on PDA (like Palm and Windows Mobile) and desktop.
