Download
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps).
Contact Maps can be used to understand proteins' :
1. Secondary structures
2. Conformational arrangements
3. Surface interactions
Features
- Structural Informatics
- Protein Contact Map
- Java based CLI application
Project Samples
License
GNU General Public License version 3.0 (GPLv3)Follow Protein Contact Matrix Generator
Other Useful Business Software
Earn up to 16% annual interest with Nexo.
Put idle assets to work with competitive interest rates, borrow without selling, and trade with precision. All in one platform.
Geographic restrictions, eligibility, and terms apply.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of Protein Contact Matrix Generator!
