Search Results for "work" - Page 3
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Showing 143 open source projects for "work"
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cmotif
A method for mining conditional phosphorylation motifs
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif for a non-redundant identification of significant phosphorylation motifs. ... -
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OPTIMA cidoc-crm Semantic Annotation
Semantic annotation of archaeology reports with respect to CIDOC-CRM
The semantic annotation system OPTIMA is the result of Andreas Vlachidis PhD work, (supervised by Prof. Douglas Tudhope, University of Glamorgan, UK). OPTIMA performs the NLP tasks of Named Entity Recognition, Relation Extraction, Negation Detection and Word Sense Disambiguation using hand-crafted rules and SKOS terminological resources (English Heritage Thesauri and Glossaries). The resulted semantic annotations are associated with classes of the (ISO 21127:2006) CIDOC Conceptual Reference Model (CRM) and its archaeological extension, CRM-EH. ... -
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Java Virtual Petrographic Microscope
A virtual petrographic microscope for geologists
...jVPM makes mineralogy to be easier to examine a thin section and to understand the characteristic properties for each mineral without a petrographic microscope, which is known to be very expensive. It is mainly addressed to students as a guide in individual or supervised laboratory work. -
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NN Image Recognition (with source-code)
This is ANN trained application to predict digits from 0 - 9.
...I trained ANN with 100 samples of each digit. It takes input of 20x20 pixel image and predicts it with Neural Network. It may predict wrong digit due to very low sample data but it work 90% correctly. Note: JRE 1.6 is required to run this application. -
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qcasoft
Qualitative Comparative Analysis with Fuzzy Data in JAVA
This software allows qualitative comparative analysis with fuzzy data. The program is based on the work of C.C. Ragin. For more information, see the following articles: * Ragin, C. C., 1987, The Comparative Method. Moving beyond qualitative and quantitative strategies, Berkeley/Los Angeles/London: Univ. of California Press. * Ragin, C. C., 2000, Fuzzy-Set Social Science, Chicago/London: University of Chicago Press. * Ragin, C. -
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Niah (Statistical Disclosure Control)
Niah supports k-anonymity statistical disclosure control assessments
Niah is a simple java tool for use in statistical disclosure control risk assessments. It implements the k-anonymity model of disclosure risk for data in csv in format. This work was developed as part of a PhD project at the University of Glasgow and during an internship with the Scottish Government. -
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JPacketGenerator
UDP Packet Generator (Stream generator)
...Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project will be useful I'll post some more detail or helps about the usage. -
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Security Officers Management and Analysis Project (SOMAP) is all about defining security management work methods and supplying Security Officers with tools to do their job more efficient and following standards easily.
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SeqWare has moved to GitHub, see https://github.com/SeqWare SeqWare is a project to create a tool set to work with next generation genome sequencers (SOLiD & Illumina). It includes a LIMS, Pipeline, and Query Engine. Check out the wiki link below to see documentation. You can get the source from the Develop link.
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Onco-STS
A web-based Laboratory Information Management System
...These meta-data of the sequencing and analysis procedures include information about the samples and projects as well as the sequencing centers, platforms, data locations, results locations, alignments, analysis specifications and further information relevant to the experiments. The sample tracking system for oncogenomic studies (Onco-STS) is designed to store these data and make them easily accessible to the researchers who work with the samples. The system is a web application, which includes a database and a front-end web page that allows the remote access, submission and updating of the sample data in the database. -
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...The first module in the project was the "ePrescribing application"; certified by RxHub and SureScripts back in 2007. New implementation needs to "re-certify" with SureScripts (which should not be much of a problem) Work on eLabs (using ELINCS, LOINC etc.) is being considered as participants join the project become available. The HL7 RIM allows for eImaging applications, eConsults applications, eReferrals applications, etc. Applications work independently, but through HIE, results come back to the provider to see it in its "CPOE Section or Module" Requires licensing of the MediSpan Drug Database for ePrescrib
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Autmated Peptide Screening
Screening peptides for MHC and/or MHC-T cell receptor affinity
...A detailed method for determining the peptide ligand for any sequenced and modeled T cell receptor will be published and link added at some point. These scripts are written quickly in a couple weeks to meet a task and could be re-written more eloquently. I may or may not work on this project again, the goal would be to introduce amino acids into any protein in openCL to allow automated design on GPU's.Limits-The standard PDB codes used slightly modified, proline not at angles, peptide shld be linear, -
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SILENT
a Scratch Interface for Lego NXT
SILENT is a Scratch modification that interfaces with LEGO MINDSTORM NXT 2.0 robot. It's based on Scratch 1.4.2, developed in JAVA, Squeak and Bash scripting. It's supported by Linux and Windows XP/7, in which it was tested. It required JAVA>=6. Easy to setup and easy to learn! Please leave your review to help me to improve it! -
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Cantharella
Pharmacochemical database of natural substances
The information system (IS) “Cantharella: Pharmacochemical database of natural substances” share and sustain pharmacochemical data of all organisms collected for the study of their natural substances, with a controlled access via internet. -
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TiffToDicom
A converter from Tiffs to Dicoms
This is not a final version but a work in progress. I am releasing the code only in the hopes that it will be helpful. There will be further updates in the future as the project is being actively developed. -
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Cherokee is a fully extensible and scriptable automation engine for any and all java applets. To make it work for your favorite java applet the most you have to do is write is two classes.
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Injection Wizard is an application for injecting traffic into WEP protected Wi-Fi networks, like aireplay-ng, but it's much more easy to use and it can work with worse conditions.
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The software is related to the PhD thesis of Zoltán Farkas, used to simulate work distribution and processing in hierarchical desktop grid systems.
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Index biological data (genbank sheets, Uniprot...) in a Solr indexer, with index shard support and provides a query interface. Project goal is to create a virtual image with indexer and web interface to query and visualize biological data.
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Global Epidemic Simulator
A platform for modelling influenza-like epidemics and containment
The Global Epidemic Simulator is a platform for modelling directly transmissible human diseases such as influenza, and testing intervention policies that may reduce the duration or severity of an outbreak of such a disease. Building on previous work, this model is spatial and individual-based, using various geographical and demographic data sources to place households at absolute locations, populated with individuals of specific ages who each attend schools or workplaces situated in their vicinity. The significant advance of this project over previous work is the global nature of simulation, the memory and performance requirements of which motivate us towards a multi-core, multi-computer solution. -
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Tunelator processes tunnel profile data for surveying work. It provides a powerfull grid editor, 3D preview, export to Prowin, Ispol, MDT and DXF (2D and 3D views with convenient layering).
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***** Discontinued (may still work but will not be updated and supported anymore) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R via Rserve. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details.
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Matrex is a lightweight vectorial spreadsheet: calculates blocks of values, not single cells; it is strongly multithreaded; users can work together on sheets using a server. Adapters to matlab, scilab, octave, R.
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***** Discontinued (may still work but will not be updated and supported anymore) ***** This is the MultiView-Extension for NetLogo which enables you to visualize more than one patch variable at a time in additional view windows which represent the world. _______________________________________ Please have also a look on our info page about other NetLogo extensions at http://www.uni-goettingen.de/en/315075.html.
