Search Results for "network analysis" - Page 2
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Showing 174 open source projects for "network analysis"
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Stop vibe-debugging.AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
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Tellervo
Dendrochronological sample measurement, curation and analysis program
Tellervo enables users to measure, curate and analyse dendrochronological samples. It has a server/client architecture enabling users to collaborate within and between laboratories. -
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
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GESPA
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are... -
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SoNIA (Social Network Image Animator)
Social Network Image Animator creates animations of network data
SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/ -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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VANTED - Visualization and Analysis of NeTworks containing Experimental Data At SourceForge the VANTED development history is preserved, only limited amount of development will proceed here. Please head on to the most recent developments, which can be observed at www.vanted.org.
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Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.
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Deem
Analyze time-course data with significance tests, clustering, modeling
Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional... -
Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
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SetFon focus is an interface web based for Praat resources (www.praat.org) wich focus speech sound annalysis; it is a gerent program for acoustic analysis PHP/Mysql based. Developed with the framework SIMP.
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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ldi
Lucene Oracle Integration using Data Cartridge API
Lucene Domain Index is full integration of Lucene project running inside the Oracle database using Oracle JVM. The integration provides a transparent detection of row data changes and an SQL layer for doing search. -
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xBook
xBook is a framework for archaeological databases
xBook is a common framework for several archaeo-related database applications developed and published by Ludwig Maximilian University of Munich. All database applications that are based on the framework (called Books) provide the same basic technical features, but each application can be extended individually. Especially the Synchronisation and the User Rights Management are strong features that allow creating backups and sharing your data to collaborate with other users. The... -
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Cuttlefish aims to be a highly extensible visualization and analysis platform for all kinds of network data. IMPORTANT: The Cuttlefish project has been migrated to github: https://github.com/dev-cuttlefish/cuttlefish
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
...For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406 -
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AsphaltOpen is a project to visualize data collected during road asphalting operations. Asphalt contractors can use the software to visualize their operations, learn from the visualizations, and improve their processes continually.
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BioDare
BioDare is Biological Data Repository focused on timeseries data
BioDare (Biological Data Repository) was developed under the multi-site ROBuST project (http://hallidaylab.bio.ed.ac.uk/ROBuST.html) to support data exchange inside the project. It is a web application which allows data-sharing (including public dissemination), data-processing and analysis, with the main focus on time-series data produced in circadian experiments. The main features of BioDare are: - an online repository for experimental data accompanied by extensive... -
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locusvu
Tool for genomics;automates data retrieval from db;enables workflows
LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these... -
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Myrtle
A simple programmable spreadsheet for learning statistics.
Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and... -
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iBRAIN2 Workflow Manager
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management. It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets. -
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NeSSi2
Network security simulator
At the moment NeSSi² is not actively maintained anymore since we are planning a successor project. NeSSi² is a network simulation tool suite addressing in particular network security aspects. Sample capabilities are profile-based attack generation, traffic analysis and support for attack/malware detection algorithm plugins. -
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CytoCopteR
A Cytoscape plug-in for training logic models, based on CellNOptR.
Homepage: www.cellnopt.org Based on prior knowledge networks CellNOptR can derive functional information about the network using logic modeling. CytoCopteR is a friendly way to use CellNOptR taking advantage of the network visualization and analysis of Cytoscape and without requiring knowledge on R. -
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Security Officers Management and Analysis Project (SOMAP) is all about defining security management work methods and supplying Security Officers with tools to do their job more efficient and following standards easily.
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Onco-STS
A web-based Laboratory Information Management System
Onco-STS is a web-based Laboratory Information Management System for sample and analysis tracking in oncogenomic experiments. The systematic sequencing and analysis of tumour samples, as well other oncogenomic experiments, necessitates the tracking of relevant sample information throughout the investigative process. These meta-data of the sequencing and analysis procedures include information about the samples and projects as well as the sequencing centers, platforms, data locations,... -
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Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
