Showing 317 open source projects for "ms-sys"

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  • 1
    MSqBAT

    MSqBAT

    Label-free protein quantification for LC-MS

    MSqBAT is a freely-available all-platform software application for label-free quantification of proteins from LS-MS data. It was developed in the lab of Dr. Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ). It’s main features are 1) Label-free, MS1-based quantification 2) Support both LC-MALDI-MS- as well as LC-ESI-MS data 3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data 4) Convenient, graphical user interface Acknowledgements The development of MSqBAT is kindly supported by YourKit Java Profiler.
    Downloads: 0 This Week
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  • 2

    Adele

    Adhoc Data Exploration - Live & Easy

    ...Adele runs without installation from USB stick for Windows, Linux and MacOSX. Last added changes: - data science tools (V1, IQR) - export to remote and desktop databases (mysql,sqlite, ms access) - internet features for emails and domains
    Downloads: 0 This Week
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  • 3
    Maltcms
    The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
    Downloads: 0 This Week
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  • 4
    The Open Modeling Interface and Environment (OpenMI) defines a standardized way to exchange data between computational models that run simultaneously. OpenMI aims to enhance process interaction representation in integrated environmental modelling.
    Downloads: 0 This Week
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  • 5
    Pipes is a desktop system which analyzes an AutoCad(TM) drawing of a sprinkler system, checks for flaws and after these are eliminated, adds the size/diameter labels to the drawing. Tutorial: http://users.norwoodlight.com/janh/wink/autopipes-entry.htm
    Downloads: 0 This Week
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  • 6

    eyeCure

    eyeCure helps you cure your ill eyes, tired or intermittent exotropia.

    eyeCure helps you cure your tired eyes or intermittent exotropia (exodeviation) by forcing you take rest regularly, if you don't feel good in eyes, or even have headache for too much computer usage. eyeCure did help me feel much better. Hope it helps you too.
    Downloads: 0 This Week
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  • 7
    Interactive Web Physics
    Interactive Web Physics is a Java, Web-based animation and problem designer tool. Anyone can quickly design mathematics or physics animations and simulations that run in a web browser. Unlike other solutions, no knowledge of programming is required.
    Downloads: 0 This Week
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  • 8

    LiDSiM

    LImits of Detection SImulation for Microbes

    LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes. For more details about LiDSiM and its functioning, please see "Estimating the Computational Limits of Detection of Microbial Non-Model Organisms" Mathias Kuhring and Bernhard Y. Renard (http://onlinelibrary.wiley.com/doi/10.1002/pmic.201400598/abstract) PLEASE NOTE, it is recommended to read the paper and the readme.txt file before using LiDSiM.
    Downloads: 0 This Week
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  • 9
    Gecko Hamaker

    Gecko Hamaker

    Calculates Hamaker coefficient,interaction free energy,force,torque.

    The Gecko Hamaker open-source software project is a full implementation of the fully retarded Lifshitz formulations for isotropic and anisotropic plane-plane and cylinder-cylinder interactions with intervening interlayer materials, planar systems of up to 99 layers, and graded interfaces for the modeling of grain boundaries or other continuously changing systems, accompanied by a database of material optical properties spectra. The machine-readable optical property database is available...
    Downloads: 3 This Week
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  • 10
    CatMDEdit - metadata editor
    CatMDEdit is a metadata editor tool for describing resources, mainly geographic information. Developed by IAAA (University of Zaragoza) and GeoSpatiumLab S.L., sponsored by IGN Spain. Technical details: Java, XML, multiplatform, multilingual.
    Downloads: 24 This Week
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  • 11
    LARS
    LARS (Lightning Assessment of Risk for a Structure). LARS is a simple tool for the lightning assessment of risk for a structure, according to standard IEC 62305-2, second edition.
    Downloads: 9 This Week
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  • 12
    BiMS

    BiMS

    BiMS (biclustering for mass spectrometry data) is a Java application d

    BiMS (biclustering for mass spectrometry data) is a Java application designed to allow the application of biclustering algorithms to mass spectrometry datasets. Users can load their MS datasets and apply different clustering and biclustering algorithms (current version includes Bimax and BiBit). In adition, users can load raw datasets (in mzML or mzXML formats) and preprocess them using MALDIquant package and MassSpecWavelet.
    Downloads: 0 This Week
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  • 13
    CIG-P

    CIG-P

    CIG-P is a simple yet flexible data visualization tool

    CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset.
    Downloads: 0 This Week
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  • 14

    IQuant

    A pipeline for quantitative proteomics based upon isobaric tags

    IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by iTRAQ-8plex for testing and a user's manual. ...
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  • 15
    JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
    Downloads: 0 This Week
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  • 16
    JPIE is an implementation of an Open Source Java to Prolog/Prolog to Java interoperability mecanism based on the Java VM.
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  • 17
    Hilbert II - QEDEQ

    Hilbert II - QEDEQ

    proof verifier for mathematical proofs and documentation generator

    In the tradition of Hilbert's program we create a formal correct (checkable by a proof verifier) but readable (like an ordinary LaTeX textbook) mathematical knowledge base which is freely accessible within the internet. Logic and set theory started.
    Downloads: 0 This Week
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  • 18
    E.N.M.L. means Environmental Noise Model Language. The target of the project is the definition of a XML specification model mainly devoted to electronic acoustic data exchange. ENML aims to format ANY kind of noise measurement.
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  • 19
    Easy Equations

    Easy Equations

    Hand Written Equation Creator

    Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. Software Requirements: JDK 7 or higher. Linux Platform with kernel version 2.7 or higher.(for Linux users).python...
    Downloads: 0 This Week
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  • 20
    A high-performance implementation of the BACnet I/P and MS/TP protocol written for Java (minimum version 1.5) by Infinite Automation Systems. Supports all BACnet services and full message segregation. Can be used for field devices or for control platforms. For commercial licenses contact https://infiniteautomation.com/bacnet4j-open-source-bacnet-library/ The most recent code is here: https://github.com/infiniteautomation/BACnet4J For support see: https://forum.infiniteautomation.com/category/12/bacnet4j-general-discussion
    Downloads: 2 This Week
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  • 21
    A java-based framework to determine file origins on a file system by accessing system and application logs and track the evidence trace through metadata.
    Downloads: 1 This Week
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  • 22
    Downloads: 0 This Week
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  • 23
    Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
    Downloads: 1 This Week
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  • 24
    Java & MPEG-7 based tools for annotation and retrieval of digital photos and images (Caliph & Emir). LIRE has moved to https://github.com/dermotte/lire. Caliph & Emir have moved to https://github.com/dermotte/CaliphEmir.
    Downloads: 0 This Week
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  • 25
    FroZenLight connects simple line art and mathematics. The source of light can be positioned so that either symmetric reflection patterns or secret messages (Cryptography) are created. Example light patterns and math exercises for education are provided.
    Downloads: 0 This Week
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