Search Results for "command line" - Page 13

ARTADE (ARabidopsis Tiling-Array-based Detection of Exons) is a standard tool for the automatic annotation of genome-wide tiling-array data in Arabidopsis. ARTADE is a program originally written by Dr. Tetsuro Toyoda, RIKEN, Japan.

A verilog language compiler written using Java and JavaCC. It produces a netlist, an ascii text file, of all the cell connections. It can compile very large circuits comprised of many modules.

The Unified Search Framework is an HPC tool for conducting search optimization and experiment design on High Performance Computing platforms. USF has been designed for platforms containing thousands of processors, and tested to 10,000 CPU cores.

RepeatMap is a collection of time/memory efficient algorithms and data structures to enable rapid counting & querying of kmers (sequences of length k) counts in large sequences. E.g. a query could be "how many times is 'ACGTCATGGTAC' found in a genome."

A command line java tool that allows creating images of earthquake occurrences plotted on a map over time. These images can then be used to create a video / animation (with a seperate tool like mencoder)

A simple little program, that can convert quaternions from a exponential form to a usual form. I will argue for this method, which I find very natural and quite intuitive.

Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).

Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project

This program compares two words (Strings), and checks whether they look alike. It is intended to be used mainly by legal/government organizations that allow company registrations and name reservations. Alpha stage - Please read the documentation.

With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.

OpenGGD aims to be a solution that centralizes the GPS information of a vehicle fleet, acting as an interface among different GPS devices or their control programs and different GIS programs

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...

mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.

Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.

JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.

Ariel is an implementation of the quadratic sieve in Java. Ariel is simple to use and requires minimal knowledge of the sieve's mechanisms for factorizations.

Grid-Enabled Molecular Simulation Repository (GEMS)

MACOW is a formal and scalable mandatory access implementation suitable on open worlds such as the provided on Semantic Web, Autonomic Computing and Coaltions and Federations scenarios. It is able to access control on distributed systems.

Framework: Project for Evolutionary Predator Prey Algorithms, used to implement an evolutionary scheme based on the developement by van Laumanns. Implement testproblems, special behaviours, environments, and other yet not known features.

The CodeTime platform covers every aspect of parallel software from authoring, through distribution, to run-time. Its goals are: high programmer productivity; write once, run high performance anywhere; and wide acceptance.

The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.

Software package for building, training and scoring hidden Markov models (HMMs).

TreeSoft is a collection of softwares that build or manipulate phylogenetic trees.

CherBot is an information bot for Crossfire, Daimonin and good old plain IRC that keeps track of which players collect which items, who's been online, determines a level ranking, provides a mail system for mailing offline players, manages clans and

A polynomial-time algorithm for constructing level-2 phylogenetic networks from dense sets of rooted triplets.