Showing 4 open source projects for "network analysis"

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    Pysces

    Pysces

    PySCeS is the Python Simulator of Cellular Systems

    PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.
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  • 2

    Ichnaea

    Performance Timing Tools

    Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and...
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  • 3
    BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
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  • 4
    GNU Pinch is a tool for the analysis of the energy consumptions of industrial processes. Given a process involving energy requirements, the program delivers a report of the most efficient heat exchanger network in terms of consumption and fixed costs.
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