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Showing 28 open source projects for "together"
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Charmol
Program for molecular graphics
...As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) ... -
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QSMM
An adaptive state model development framework.
QSMM, a recursive acronym for "QSMM State Machine Model", is a framework for learning finite automatons that perform goal-directed interaction with entities which exhibit deterministic or stochastic behavior. The learning process can be carried out in real time together with the interaction process. A basic building block for supporting state models of finite automatons is adaptive probabilistic mapping, which for an argument from its domain returns more often results that maximize or minimize values of one or more objective functions. Finite automatons can be represented by assembler programs with user-defined instructions that perform effective work. ... -
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Gwyscope
Open hardware SPM controller with advanced sampling support.
...Valtr et al., Scanning Probe Microscopy controller with advanced sampling support, HardwareX, Volume 15, e00451 https://www.hardware-x.com/article/S2468-0672(23)00058-5/fulltext It is based on a low cost FPGA board Red Pitaya and additional high bit depth AD and DA converters. When put together with the AFM scanning hardware (sensor, scanner and their amplifiers) and user interface software it can serve as a standalone SPM system. Otherwise, it can serve as a sub-module for a custom built SPM system, e.g. providing the feedback loop mechanism only. Finally, it can be used as a board for developing advanced sampling techniques, which was the primary goal. -
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Project: Icarus
A model rocketry project studying temperatures inside the body tube
Project: Icarus is a proof of concept model rocketry research project that brings several individual projects together into a single model rocketry research launch vehicle. This specific project includes an avionics payload, temperature sensors along the body, and a video camera. The sensors record the heat buildup inside the body tube as the solid rocket motor burns and fires the ejection charge. The sensors are placed in three different locations along the body tube to provide data on the temperature between the motor mount and the body tube, the temperature above the motor mount but below the flameproof recovery wadding, and finally the area where the parachute is housed, just above the wadding. ... -
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PUPIL (Program for User Package Interface and Linking), is a software environment that allows developers to link quickly and efficiently together multiple pieces of software in a fully automated multi-scale simulation. More specifically, it supports QM/MM MD simulations where the user might choose among any of the different MD engines and QM engines, which are connected to PUPIL as external programs through a tiny specific interface. One of the main advantages here is that the user can use most of the functionalities that may have those external programs interfaced without the necessity to be reimplemented again on independent interfaces. ...
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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PMCGPU
Parallel simulators for Membrane Computing on the GPU
Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g. CUDA, OpenCL, etc). Other parallel platforms are also welcome (multicore and manycore, FPGAs, etc). This project has been initiated by the Research Group on Natural Computing (Department of Computer Science and Artificial Intelligence, University of Seville). ... -
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aioulinux
Linux for Arduino and Makers developers
...Contribute to a secure Linux distribution. Let's collaborate and bring the new Aioulinux to life in 2024! Ready for a project recognized worldwide? Contact me. Let's make a mark together! Today, our distribution includes the following items: =================== -
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Collaborative Computing Project for NMR
Collaborative Computing Project for NMR (CCPN)
...CCPN also has a leading role in the development of a NMR data-sharing standard and coordination of NMR instrumentation proposals for RCUK and BIS. The 28 partners of CCPN jointly cover all aspects of biomolecular NMR and together they promote excellence in science in their respective fields. -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
...With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. Contigs are generated using different assembly algorithms and then merged together to achieve longer continuity. Re-aligning all the reads back to the draft contigs and recalibrating each sequence base achieves a final consensus. Using finished clones for QC, the pipeline is able to obtain assemblies with clone coverage of 99.7% and consensus base quality of Q39. Developed at the Wellcome Trust Sanger Institute. -
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This is the reference library for ICS (Image Cytometry Standard), an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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An ethernet sniffer for BrainNet36®
An ethernet sniffer for the EEG acquisition system BrainNet36®
This Ethernet sniffer was designed to work together with the medical device for EEG acquisition BrainNet36® (BNT36), from EMSA Equipamentos Médicos Ltda. BrainNet36® has 36 channels, A/D converters with 16 bit accuracy, conversion time of 10 µs and Ethernet communication interface. Being a device for clinical purposes, BrainNet36® does not export data online. This sniffer was developed to allow online processing by working in promiscuous mode and recording data in a plain text file. -
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mrCaNaVaR is a more user friendly and faster re-implementation of our previously published algorithm together with the mrFAST/mrsFAST/drFAST read mapping programs to discover large segmental duplications and deletions and predicts absolute copy numbers.
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MFR LQ controller with SBU
Model-free recursive LQ controller with GSL and ODE
...This theory executes the optimum control without the model information. The control of the monocycle(=独轮车=獨輪車=segway=Self Balance Unicycle=SBU=赛格威=賽格威) was executed by using Open Dynamics Engine that was a physical engine together with this theory. -
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The ASN.1 Compiler
Go to github.com/vlm/asn1c for the latest version.
This ASN.1 compiler turns ASN.1 specifications into C code. The asn1c is shipped together with conformant BER/DER/XER/PER codecs. The X.509, GSM TAP3, MEGACO, RRC and LDAP encoding and decoding examples are part of the source code distribution. NOTE: THE asn1c PROJECT HAS LARGELY MOVED TO GITHUB: http://github.com/vlm/asn1c -
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BRAHMS is a Modular Execution Framework for dynamical systems. It knits together independently-authored software modules implementing dynamical processes into an integrated system, and supervises the deployment and execution of that system.
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COS - Parallel Community Detection
COS is a free, opensource parallel k-clique community detection method
Clique percolation method On Steroids (COS) enable k-clique communities to be detected, in parallel, from large-scale networks. Its low memory requirements, together with its linear speedup, make it really efficient, even on dense, highly interconnected networks. COS should be the method of choice for k-clique community detection aiming at very high performance and low resource requirements. -
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LabMonkey Embedded Automation Platform
Create networks of embedded devices for data logging/automation tasks.
LabMonkey is a collection of designs for embedded devices which can be networked together to provide a range of automation, data logging and signal processing functions. A key design objective is to use as little dedicated hardware as possible for communication between nodes in the network, and to be able to adapt the network topology in real-time so as to minimize the occurrence of collisions between packets. To achieve this, a protocol has been designed specifically for the task, and implemented in assembler for AVR microcontrollers. ... -
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FAZIA DAQ
The aim of FAZIA project is to build a 4Pi array for charged particles
The FAZIA project groups together more than 10 institutions in Nuclear Physics, which are working in the domain of heavy-ion induced reactions around and below the Fermi energy (10-100AMeV). The aim of the project is to build a 4Pi array for charged particles, with high granularity and good energy resolution, with A and Z identification capability over the widest possible range. -
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The N8VB vCOM Virtual Serial Port Driver creates pairs of virtual serial ports on your Windows 2000 or XP system that are "virtually" connected together like a null modem cable. It behaves like a Virtual Null Modem Cable.
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A set of command-line utilities for annotating and manipulating DNA sequences in FASTA format. Generate restriction fragments, ORF's, translations, reverse complement, etc. . - and tie it all together with Unix pipes for complete virtual cloning.
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vcd2svg can parse Value Change Dump (VCD) files and draw an impulse diagram using Scalable Vector Graphics (SVG). It works together with the GHDL open-source simulator.
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These simple programs are for doing data reduction and then display of columns of tab delimited data. They are designed to be piped together so you can do multiple things at once. This means they typically read from stdin and output to stdout.
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M-ICE is a modular hostbased intrusion detection framework. It is used as middleware to close the gap between IDS research and IDS development. M-ICE consists of various parts that can be connected together by using network-or interprocess-communication
