Showing 4 open source projects for "memory usage"

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  • 1
    FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
    Downloads: 3 This Week
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  • 2

    rw

    rw calculates rank-width and rank-decompositions.

    ...Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. On 2009's computers it works quite well up to graph sizes of about 28 nodes. Runtime and memory usage are exponential in the graph size.
    Downloads: 55 This Week
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  • 3
    UniversalMer

    UniversalMer

    A CLI k-mer counting tool for multiple sizes of k at once.

    UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.
    Downloads: 0 This Week
    Last Update:
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  • 4
    Judy is a general purpose dynamic array implemented as a C callable library. Judy's speed and memory usage are typically better than other data storage models and improves with very large data sets.
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    Downloads: 77 This Week
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