Search Results for "memory usage"
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Showing 25 open source projects for "memory usage"
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parca
Continuous profiling for analysis of CPU and memory usage
Continuous profiling for analysis of CPU, memory usage over time, and down-to-the-line number. Saving infrastructure costs, improving performance, and increasing reliability. A single profiler, using eBPF, automatically discovers targets from Kubernetes or systemd across the entire infrastructure with very low overhead. Supports C, C++, Rust, Go, and more. Both producing pprof formatted profiles with the eBPF-based profiler and ingesting any pprof formatted profiles allowing for wide language adoption and interoperability with existing tooling. ... -
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Bowtie 2
A fast and sensitive gapped read aligner
Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. ... -
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Sming
Open source framework simplifying the creation of C++ applications
Sming is an asynchronous embedded C/C++ framework with superb performance and multiple network features. Sming is open source, modular and supports multiple architectures including ESP8266 and ESP32. Superb performance and memory usage (Sming compiles to native firmware!) Fast and user-friendly development. Integrated host emulator to assist with developing, testing, and debugging libraries and applications on a PC before uploading them to an actual microcontroller. Built-in powerful wireless modules. Compatible with standard Libraries use popular hardware in a few lines of code. ... -
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FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
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5
rw
rw calculates rank-width and rank-decompositions.
...Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. On 2009's computers it works quite well up to graph sizes of about 28 nodes. Runtime and memory usage are exponential in the graph size. -
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asammdf
Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)
*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4 -
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UniversalMer
A CLI k-mer counting tool for multiple sizes of k at once.
UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists. -
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Gap.app
Gap.app is a frontend and distribution for GAP on macOS
A native Macintosh front-end and distribution for the GAP computer algebra system. It provides a Mac-like command editing environment and save/load, while making available graphical libraries compatible with xgap. -
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LaMa
LaMa - A Localization and Mapping library
...It includes a framework for 3D volumetric grids (for mapping), a localization algorithm based on scan matching, and two SLAM solutions (an Online SLAM and a Particle Filter SLAM). The main feature is efficiency. Low computational effort and low memory usage whenever possible. The minimum viable computer to run our localization and SLAM solutions is a Raspberry Pi 3 Model B+. We provide a fast scan-matching approach to mobile robot localization supported by a continuous likelihood field. It can be used to provide accurate localization for robots equipped with a laser and a not-so-good odometry. ... -
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slimfastq
An efficient lossless compression for fastq files.
slimfastq is a cli application that compresses/decompresses fastq files. It features: * High compression ratio * Relatively low cpu/memory usage * Truly lossless compression/decompression -
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megatest
Run tasks/tests, get trustworthy pass/fail info rolled up
Distributed test running system. build for running simulations, quality assurance or similar where you need to run a large number of tests. Supports dependencies, iteration, disk space management and log file analysis. -
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment, generates BED methylome and report files following the NIH standards. P3BSseq outperforms the known BSseq mappers regarding running time, computer hardware requirements. ... -
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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wpcount
Word and phrase counting software
Counts words, partial words, and phrases in text files. Optimized for performance and minimum memory usage. Supports various encodings and can process files larger than 2GB. -
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YASAV
SRAM Memory Aging Simulator for Image/Video Processing Systems
YASAV is a GUI-based tool for fast analysis and visualization of SRAM based memory aging. The customization is done for YUV videos to realize use cases for image/video processing applications. This tool accepts SRAM scratchpad memory configuration and user parameters (like test data sets, required aging years etc.) and provides aging estimates in terms of Static Noise Margin (the metric of SRAM aging estimation) and in-depth duty cycle analysis. -
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MathX
Fixed-length Arithmetic-types library
MathX is a fixed-length arithmetic-types written in pure c++ templates. The goal is to provide signed-integer, unsigned-integer, IEEE-754 float-point and fixed-point types, all with specific number of bits. To this moment, only signed-integer and unsigned-integer are completed for little-endain architecture. Any compiler that support c++03 or c++11 can successfully compile MathX. Refer to README for more information. -
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LuaCV
OpenCV library wrapper for Lua language
LuaCV is OpenCV library wrapper for Lua language. Main goal is to access fast image processing library to light-weight, non-type language. Thanks to CMake project is a much easier to compile it under many OS platforms which are supported by OpenCV. LuaCV is being developed at faculty of Electrical Engineering and Communication of Brno University of Technology in Czech republic. Working with: Lua 5.2, OpenCV 2.2-2.4 LuaCV-0.2.0 (svn rev. 62) is last version compatible with Lua 5.1... -
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Download GPS track from the GPS logger "Solmeta Geotagger Pro" under Linux; Auslesen des Geotaggers * Geotag images with image direction, pitch, roll; Geotagging mit Blickrichtung * Altitudes/Höhen from geonames.org * NMEA analysis: DOP, satellite
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JeeObserver is an open source java monitoring tool used to analyze java applications and servers performance. It can monitor servlets, JSF actions, EJB beans, JVM cpu and memory usage and HTTP sessions. Full documentation at www.jeeobserver.com
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
...CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally parallel encoding, optimizing memory usage and so on. Currently, when training corpus, compared with CRF++, CRF# can make full use of multi-core CPUs and only uses very low memory, and memory grow is very smoothly and slowly while amount of training corpus, tags increase. with multi-threads process, CRF# is more suitable for large data and tags training than CRF++ now. ... -
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jLlama is a desktop application to monitor servers over SSH. Any figure retrieved from the command line can be polled and graphed in real time. Out of the box, jLlama can graph CPU and Memory usage for Linux and Solaris servers.
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Judy is a general purpose dynamic array implemented as a C callable library. Judy's speed and memory usage are typically better than other data storage models and improves with very large data sets.
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JavaSysInfo is the java version of phpSysInfo, a library that provides information on the host being accessed. It parses /proc and displays things like Uptime, CPU, Memory, SCSI, IDE, PCI, Network adaptors and traffic, Disk usage and Video Information
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Volumetric is a 3-D image processing tool. It reads point cloud data, expands it to a volumetric space with highly effective memory usage, and filter out necessary points.
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