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1

librsb

A shared memory parallel sparse matrix library including Sparse BLAS.

librsb is a library for sparse matrix computations featuring the Recursive Sparse Blocks (RSB) matrix format. This format allows cache efficient and multi-threaded (that is, shared memory parallel) operations on large sparse matrices. The most common operations necessary to iterative solvers are available, e.g.: matrix-vector multiplication, triangular solution, rows/columns scaling, diagonal extraction / setting, blocks extraction, norm computation, formats conversion.

Downloads: 14 This Week

Last Update: 2026-03-31
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2

crossmap

convert genome coordinates betweeen assemblies

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

Downloads: 6 This Week

Last Update: 2025-06-25
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3

ChIP-Seq

The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.

Downloads: 0 This Week

Last Update: 2019-02-21
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4

ped2raw

Utility to convert PED genome file into RAW SNP format. Creates multiple files per person. Supports big files. The same conversion utility has been included into "aisconvert" toolkit, so this project is rather deprecated.

1 Review

Downloads: 0 This Week

Last Update: 2013-04-29
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