Search Results for "cpu memory usage"
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Showing 17 open source projects for "cpu memory usage"
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Bowtie 2
A fast and sensitive gapped read aligner
Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. ... -
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Sming
Open source framework simplifying the creation of C++ applications
Sming is an asynchronous embedded C/C++ framework with superb performance and multiple network features. Sming is open source, modular and supports multiple architectures including ESP8266 and ESP32. Superb performance and memory usage (Sming compiles to native firmware!) Fast and user-friendly development. Integrated host emulator to assist with developing, testing, and debugging libraries and applications on a PC before uploading them to an actual microcontroller. Built-in powerful wireless modules. Compatible with standard Libraries use popular hardware in a few lines of code. ... -
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FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
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UniversalMer
A CLI k-mer counting tool for multiple sizes of k at once.
UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists. -
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder) -
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SimpleDCS is a Distributed Control System made easy - fully configurable both on hardware and a software level. Experimental stage (alpha)
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LaMa
LaMa - A Localization and Mapping library
...It includes a framework for 3D volumetric grids (for mapping), a localization algorithm based on scan matching, and two SLAM solutions (an Online SLAM and a Particle Filter SLAM). The main feature is efficiency. Low computational effort and low memory usage whenever possible. The minimum viable computer to run our localization and SLAM solutions is a Raspberry Pi 3 Model B+. We provide a fast scan-matching approach to mobile robot localization supported by a continuous likelihood field. It can be used to provide accurate localization for robots equipped with a laser and a not-so-good odometry. ... -
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miRPV
miRPV: An automated pipeline for miRNA Prediction and Validation in si
miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04 -
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slimfastq
An efficient lossless compression for fastq files.
slimfastq is a cli application that compresses/decompresses fastq files. It features: * High compression ratio * Relatively low cpu/memory usage * Truly lossless compression/decompression -
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progrep
Utility to show live progress, status & stats for running simulations
progrep is a command-line tool (Linux) to show live progress report, status & stats of a running simulation or compute job that executes a given number of iterations. It shows % completed, time remaining, time elapsed, number of threads, MPI_Rank(if any), CPU usage & speed (FPS). The FPS measures may be used in benchmarking, e.g. while optimizing HPC algorithms for performance. progrep supports both single-threaded and parallel (multicore/multinode - e.g. OpenMP/MPI) jobs. progrep can also report for jobs running on remote hosts, e.g. jobs running on Linux Clusters. progrep works in client-server model. ... -
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ClckBotCreator
Write bots without knowing programming languages
This program was originally conceived as an autoclicker, but soon turned into a program to create bots for Windows. It has 4 commands(mouse clicking, setting cursor position, timer, keyboard clicking) with which you can automate any process. Also, there are a couple of tools in it that will help you comfortably write bots. Version of app is 0.2.1 App run as administrator. Syntax: 1.click: 'left' or 'right' mouse button 2.setc: x - mouse position y - mouse... -
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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MathX
Fixed-length Arithmetic-types library
MathX is a fixed-length arithmetic-types written in pure c++ templates. The goal is to provide signed-integer, unsigned-integer, IEEE-754 float-point and fixed-point types, all with specific number of bits. To this moment, only signed-integer and unsigned-integer are completed for little-endain architecture. Any compiler that support c++03 or c++11 can successfully compile MathX. Refer to README for more information. -
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ... -
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ppc_sim_booke
e500v2 simulator
An experimental ISS for freescale's e500v2 core. It is meant to simulate only cpu and memory subsystem and is purely intended for academic/learning purposes only. -
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LuaCV
OpenCV library wrapper for Lua language
LuaCV is OpenCV library wrapper for Lua language. Main goal is to access fast image processing library to light-weight, non-type language. Thanks to CMake project is a much easier to compile it under many OS platforms which are supported by OpenCV. LuaCV is being developed at faculty of Electrical Engineering and Communication of Brno University of Technology in Czech republic. Working with: Lua 5.2, OpenCV 2.2-2.4 LuaCV-0.2.0 (svn rev. 62) is last version compatible with Lua 5.1... -
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Volumetric is a 3-D image processing tool. It reads point cloud data, expands it to a volumetric space with highly effective memory usage, and filter out necessary points.
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