Search Results for "https c lib" - Page 9
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Showing 407 open source projects for "https c lib"
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Virtual Cell
Former home of the Virtual Cell platform (VCell), see http://vcell.org
This project and all source code has moved to GitHub, see https://github.com/virtualcell -
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Project 2306 IDE Rad MacOS MCU DeveR
Electronic design and programming tools suite like Eagle, MpLab
Currently Only MacOS is Present, PreAlpha means not Ready to use, Application is provided Without Strict Garantee, License not OSI. All others platform Windows, Linux, HaikuOS STILL under TEST, Dummy "Hello world" is provided instead Project2306 IDE : Application pour la programmation de Microcontroleurs et d' Application Electronique Project2306 IDE : for All whom want to Create and Develop on Embed Platform Software as Programming Tools suite and PCB Design Planned... -
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Repast
The Repast Suite is a family of free agent-based modeling libraries.
The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have been under continuous development for over 20 years. Current source code and releases are hosted on Github https://repast.github.io/ -
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WavePacket
Dynamics of quantum systems, controlled by external fields
...With its visualization of quantum dynamics generated 'on the fly', WavePacket is suitable for teaching quantum mechanics as well as for research projects, see also the numerous demonstration examples . The Matlab/Octave version is mature and has been used in production for decades. The C++/Python version has been superseded by https://github.com/ulflor/wavepacket. Using tensor train techniques, the additional WaveTrain package aims at beating the curse of dimensionalit -
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vecds - Visual Editor of Crystal Defects - A QT and OSG application for visualization of atom-embedded grids.
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This is one of my simple aplications. It is a quadratic equations calculator made in C++. I hope it will be usefull for you. It would be helpful if you could donate a small amount of money. PayPal: https://www.paypal.me/Banderblade
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LOOS
Analyze molecular simulation data
LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments -
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trj_cavity finds protein cavities throughout Molecular Dynamics (MD) simulation trajectories. The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC. The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https://sourceforge.net/p/trjcavity/wiki/Home/#ffad If you need support using this tool (or report bugs), please post it...
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Asterix
Asterix is command line parser and Wireshark plugin for ASTERIX
Asterix is command line utility and Wireshark plugin used for reading and parsing of Eurocontrol ASTERIX protocol data from stdin, file or network multicast stream. ASTERIX stands for All Purpose STructured Eurocontrol SuRveillance Information EXchange. It is an ATM Surveillance Data Binary Messaging Format which allows transmission of harmonised information between any surveillance and automation system. ASTERIX defines the structure of the data to be exchanged over a communication... -
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fast_count_multi
Extremely fast NGS read counter
...Files include: fast_count_multi - reports all counts and RPKM, multithreading support fast_count_deseq - reports gene counts in deseq compatible format, multithreading support fast_count - reports all counts with no multithreading support. usage ./fast_count_multi num_threads gtf_file bam_file(s) > output Requires bamtools API library at run time, and c++0x for compile. git clone https://github.com/pezmaster31/bamtools cd bamtools mkdir build cd build cmake .. make export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:path to/lib g++ -I bamtools/include/ -L bamtools/lib/ -o fast_count_multi fast_count_multi.cpp -lz -lbamtools -fpermissive -pthread -std=c++0x -
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PingPongPro
Find ping-pong signatures like a pro
IMPORTANT NOTE: This project has been migrated to GitHub and is no longer maintained here. Please refer to: https://github.com/suhrig/pingpongpro Piwi-interacting RNAs (piRNAs) are a class of small non-coding RNAs, predominantly active in the germ line. There, they limit the detrimental effect of transposons on the genome. They do so by forming a complex with Piwi proteins. The complex binds and then cleaves mRNA molecules of active transposons. The resulting mRNA fragments induce the... -
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finFoil is an application to help amateur surfboard fin makers foil their fins properly. All downloads are moved to https://finfoil.io Check out the homepage for the latest news and tutorials: https://finfoil.io hrobeers
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RDKit
Open-Source Cheminformatics and Machine Learning
A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and similarity searches. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided. If you use orbkit in your work,... -
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ViennaTS
The Vienna Topography Simulator
ViennaTS is a C++, OpenMP-parallelized Topography simulator, focusing on processing challenges for micro- and nanoelectronics. At its core is the Level Set framework, allowing for an implicit surface description of material surfaces and interfaces. Within this framework models for geometry manipulation such as boolean operations and chemical mechanical planarization have been implemented. -
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HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields. HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). Please cite: [Khomtchouk et al.: "HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." ...
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BamBam
Tools for genomic analysis
BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball. -
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yacas
Computer calculations made easy
NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. Yacas is an easy to use, general purpose computer algebra system. It uses its own programming language designed for symbolic as well as... -
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Calculator
My Project is a calculator i created for a school project.
My project is a calculator i created for a school project. Enjoy! Download Calculator.cpp if you want to make your own calculator. Please Consider writing a ticket if you find a bug, or writing a review. If you download Calculator.cpp, you need to have an IDE that supports the language. Here are a few suggestions: Visual Studio: https://www.visualstudio.com/en-us/products/visual-studio-community-vs.aspx (Only on Windows) Netbeans: https://netbeans.org/index.html (on Microsoft... -
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ManyEars implements real-time microphone array processing to perform sound source localisation, tracking and separation. It was designed for mobile robot audition in dynamic environments. NOTE: Development will continue on github : https://github.com/introlab/manyears
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TrailMap
A tile-based map viewer with support for GPX files.
TrailMap is a tile-based online and offline map viewer. Multiple map tile sources are supported by adapters. Currently supported features: - GPS positioning (on Android only) - Points-of-Interest from GPX and LMX files - OpenStreetMap maps - MML maps (covers only Finland) from https://tiedostopalvelu.maanmittauslaitos.fi/tp/kartta -
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**we moved to github** https://github.com/gimli-org/gimli Geophysical Inversion and Modeling Library
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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GENFIT has been moved to github: https://github.com/GenFit/GenFit GENFIT - a generic track reconstruction framework for nuclear and particle physics
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OpenOrienteering
Former project page
See https://www.openorienteering.org/apps/mapper/
