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Various scripts used in sequencing, annotation and RNAseq analysis
... files are the version used in the analysis.
Also, please be aware that these were very much developed with expediency in mind - that is, the process was expected to be performed in its final form once; little care was given to optimising runtime or chaining scripts together, and sometimes external resources are accessed manually.
A High-level Utility Package for FMI-based Software Development
The Functional Mock-up Interface (FMI) specification intentionally provides only the most essential and fundamental functionalities in the form of a C interface. On the one hand, this increases flexibility in use and portability to virtually any platform. On the other hand, such a low-level approach implies several prerequisites a simulation tool has to fulfill in order to be able to utilize such an FMI component.
The FMI++ library addresses this problem for models and tools with interfaces...
IFS Tools is a set of Java applets for the interactive, graphical construction of iterated function system (IFS) fractals. Output is in the form of IFS code and graphics.
Tools for finite automata simulation, minimization and grammar utilities (left recursion removal, context free grammar simplification and transformation to Chomsky Normal Form).
Xul Dev means for Xul development environment. The IDE is intended to design Xul interfaces and to make programs in any programming language. The IDE is written in Scriptol C++ and available in source form and as binary executable.
The Boolean Expression Reducer provides the user with various tools to visualize and analyze boolean expressions. Given an expression, it also reduces it to its Sum of Products and Product of Sums form.