Search Results for "dataset"
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19 projects for "dataset" with 2 filters applied:
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Surya
Implementation of the Surya Foundation Model for Heliophysics
Surya is an open‑source, AI‑based foundation model for heliophysics developed collaboratively by NASA (via the IMPACT AI team) and IBM. Named after the Sanskrit word for “sun,” Surya is trained on nine years of high‑resolution solar imagery from NASA’s Solar Dynamics Observatory (SDO). It is designed to forecast solar phenomena—such as flares, solar wind, irradiance, and active region behavior—by predicting future solar images with a sophisticated long–short vision transformer architecture,... -
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Kst is the fastest real-time large-dataset viewing and plotting tool available and has basic data analysis functionality. Kst contains many powerful built-in features and is expandable with plugins and extensions.
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Gemi
PCR primers / probes design from multiple & degenerate sequences
...Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python source code is available upon request. Milestone: The tool reached about 3000 downloads sine 2012. Article Gemi: PCR primers prediction from multiple alignments. Comparative and functional genomics 2012 PMID: https://www.ncbi.nlm.nih.gov/pubmed/23316117 A great review on designing primer, Gemi, and other tools: Designing degenerate primers: Overview, challenges, and computational methods. ... -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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OpenNum
OpenNum lets you distribute solvers with a nice graphical interface
...OpenNum lets you create a graphical interface adapted to your solvers by simply editing an XML configuration file. More specifically, OpenNum lets you · to collect a hierarchical dataset, · to call any executable file and · to visualize scalar and vector fields, plot graphs or show simple plain text files. It also has other useful utilities specifically designed for numerical simulation packages: · it allows managing a centralized materials dataset; · it can read several finite element mesh formats and several field formats. -
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lottie vectors
Create, display and process 2D vectors in a 3D window.
...This could be a common math symbol or greek letter, start/end signposts, or a number of the position either from the begining or after a reset. After all the information has been loaded for your dataset. Either passed over the command line, or as a text file. Lottie Vectors displays inside a figure that you can resize, rotate and turn 2D positions into a 3D picture. -
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Charting tools, backtesting tools, and data visualization tools for the most popular cryptocurrencies.
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PyCosmic is a tool to detect and clean single images from the disturbing cosmic ray hits. It was designed and tested specifically for CALIFA and other fiber-fed integral-field spectroscopy dataset. It is written in Python and can be executed from the command line. New release is version v0.5. Updated to be compatible with numpy version 1.12. New release is version v0.4. It's now compatible with astropy for fits I/O and computation time is reduced by a factor of 2.
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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Based on the Qt Python binding module PyQt4, guidata is a Python library generating graphical user interfaces for easy dataset editing and display. It also provides helpers and application development tools for PyQt4.
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pmutualinformation
Computes pairwise genes mutual information using GEPs
pmutualinformation (parallel mutual information) computes the pairwise Mutual Information for all pairs of genes from a potentially massive and heterogeneous dataset containing GEPs. GEPs can be part of different experiments collected from public repositories. pmutualinformation runs on MIMD systems and has been implemented in C using the MPI standard. -
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X-Freq
X-Ray Reflectivity Frequency Analysis
Analyze the thicknesses of a sample from an x-ray reflectivity dataset using Fourier Transform techniques. -
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. ... -
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BlogTEX is an ad-hoc blog posts extraction algorithm written in Java for TREC Blog08 dataset. It includes an optimized sentence model for clearly identifying sentence boundaries in each blog post. Its output can be customized using its config file.
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The Matlab SRTM Library is designed to be an easy-to-use interface for importing and manipulating NASA's Shuttle Radar Topography Mission (SRTM) Digital Elevation Model (DEM) dataset.
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GMM-GMR is a light package of functions in C/C++ to compute Gaussian Mixture Model (GMM) and Gaussian Mixture Regression (GMR). It allows to encode any dataset in a GMM, and GMR can then be used to retrieve partial data by specifying the desired inputs.
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The Campaign Simulator is an attempt to statistically model and predict the outcome of an American presidential election; several users assume the roles of competitive candidates and inflict the repercussions of certain decisions on a GSS based dataset.
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PhotoCloud is a tool to browse and a navigate for datasets composed of (a) a collection of registered images and (b) a 3D model over which images are aligned. The 3D model can be a point-cloud, triangle mesh. PhotoCloud is based on a client/server architecture and it is scalable: very large dataset (both in terms of (a) and (b) can be handled.
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