Search Results for "linux command" - Page 27
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1524 projects for "linux command" with 2 filters applied:
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A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
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MicroStitcher
Tiny tool capable of stitching hundreds images into one single image
This is very small tool, which is capable of stitching hundreds of images into one single image. The main purpose of the tool is to stitch small pieces of map taken by screenshots for example from OpenStreetMap. The tool automatically calculates relative positions of every single patch. A single patch has to have considerable amount of margins that are required to find control points that will match a pair of patches. -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
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The Whole-Body Control framework jointly developed at Stanford University and The University of Texas at Austin provides advanced control for fixed base manipulators and is currently running on the the Meka A2 Arm and the Dreamer/Meka Humanoid robot. The code repository is hosted on Github, please go to https://github.com/poftwaresatent/stanford_wbc
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COS - Parallel Community Detection
COS is a free, opensource parallel k-clique community detection method
Clique percolation method On Steroids (COS) enable k-clique communities to be detected, in parallel, from large-scale networks. Its low memory requirements, together with its linear speedup, make it really efficient, even on dense, highly interconnected networks. COS should be the method of choice for k-clique community detection aiming at very high performance and low resource requirements. -
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polyclip
A free library for fast clipping of arbitrary polygons
polyclip is a free library for fast clipping of polygons, written in C++. It supports arbitrarily shaped polygons, including multi-part,self-intersecting and holed polygons. Degenerate cases such as touching and overlapping polygons are also handled. polyclip is Free Software, available under the GNU LGPL license. -
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is... -
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FluxY
FluxY – a processing tool set for stable isotope label MS data
FluxY is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data used for metabolic flux analysis. To get started simply download and unzip the FluxY.zip file and follow the getting started document in the Instructions folder. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
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Phage_Finder is a heuristic computer program written in PERL that uses BLASTP data, HMM results, and tRNA/tmRNA information to find prophage regions in complete bacterial genome sequences.
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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WordSegment
wordseg project is a word segment module implemented by C#
wordseg project is a word segment module implemented by C#. It is used to segment text into tokens and to label token's attribute according its context and semantic by front-maximum matching and CRF algorithms. The following are some sentences need to be segmented: 张晓晨和付仲恺一起坐在家（西坝河东里社区）里的沙发上看非诚勿扰。 百度公司的名字源于“众里寻他千百度”这诗句。 After above sentences be segmented by wordseg, the result as follows for each sentence: 张晓晨[PER] 和 付仲恺[PER] 一起 坐 在 家 （ 西坝河东里社区[LOC] ） 里 的 沙发[PDT] 上 看 非 诚 勿扰 。... -
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CPU Balance
User-based CPU quota tool
CPU Balance is a Perl script to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs. ################ # Basic Renice Goal ################ 1. User-based balance: every user get the same cpu percentage if they ask for more; 2. all the jobs of one user has the same NI; 3. NI of all jobs tend to move as large as possible when balanced; 4. No sudden change on NI. max... -
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SOCS
SOCS is a SOLiD read mapper with bisulfite sequencing support.
SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies. -
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
CRFSharp(aka CRF#) is a .NET(C#) implementation of Conditional Random Fields, an machine learning algorithm for learning from labeled sequences of examples. It is widely used in Natural Language Process (NLP) tasks, for example: word breaker, postagging, named entity recognized, query chunking and so on. CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally... -
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wt210tocsv
Converts Yokogawa WT210 output to easily chartable CSV format
The Yokogawa WT210 outputs a CSV file through its GPIB-USB interface. The CSV is not easily chartable in Excel/Libreoffice. This will parse the CSV in a way that makes it more easily charted. -
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Fast Alignment Search Tool for di-base reads (color-space; AB SOLiD). A complementary program for the popular Illumina read mappers mrFAST and mrsFAST.
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Powersim
Energy Estimation in SystemC.
Power/Energy simulation in SystemC. Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code. Current version is 0.3.0. -
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aal
The Advanced Algebraic Language.
The Advanced Algebraic Language (AAL) is a very dynamic programming language designed to fill the void that has appeared between mainstream languages and algebra. As a result its main focus is ease of use for math problems. To download AAL check out the source code repository. There are versions available for windows and linux with both 32 and 64 bit native binaries: http://svn.code.sf.net/p/aal-lang/code/trunk/bin/