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pyHKL is the interface to DENZO/SCALEPACK packages for X-ray crystallography data processing. It runs jobs remotely and aims at minimizing user input, by including automatic error model correction, rejection accumulation and mosaicity refinement.
The package implements a variety of tools for categorization of multivariate data such as boosted decision trees, bagging and random forest, bump hunting (PRIM), a multi-class learner and others.
VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.
Ariel is an implementation of the quadratic sieve in Java. Ariel is simple to use and requires minimal knowledge of the sieve's mechanisms for factorizations.
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The gsuffix library implements serveral algorithms used for enumerative string searches. It incorporates the suffix tree and suffix array data structures as well as some other methods.
Virtuelium is an open-source multi-spectral physically based ray-tracer developed to render the visual appearance of material and to be able to do multi-scaled simulations of light interactions.
JIM is an Image Mosaicker developed at ATIS lab.
It allows you to create mosaics from a set of image. If we use it for professional aerial maps, it should also be suitable for holiday's panoramas.
CC2430 Flash programmer and simple debug interface with NoICE support. It uses USB interface to communicate with the target CC2430 over debug interface. To install on linux do: svn co https://ccflasher.svn.sourceforge.net/svnroot/ccflasher/trunk ccfl
Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.
Stance is a perl script for generating random sentences in Dutch, which can be used as translation exercises for students of Dutch. In its finished version, it should be able to generate only gramatically correct sentences.
See https://github.com/arcanericky/thermorbios953w
Project at https://github.com/arcanericky/thermorbios953w Developers are encouraged to fork and request pulls as my personal weather station has seen better days.
Thermor / BIOS BW953 and BW976 Weather Station daemon for Linux.
Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/
Applications contributed for URBI (Universal RealTime Behoavior Interface). URBI is a scripted command language used to control robots (AIBO pioneer..) as well as a robot-independant execution and developpement plateform. www.urbiforge.com www.gostai.com
"Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.
Yans is a extensible, mixed-level, Monte-Carlo Method based, discrete event network simulator. Yans is divided into interacting layers, namely: core, topology, nodes, monitors; and is driven by a config-file that describes the setup of the network.
MACOW is a formal and scalable mandatory access implementation suitable on open worlds such as the provided on Semantic Web, Autonomic Computing and Coaltions and Federations scenarios. It is able to access control on distributed systems.
Matlab package for stretched exponential fit of discrete values, such as the number of requests to each video file in a video system, the number of posts by each user in a social network (e.g., a blog site), etc.
This software generates a distorted version of an audio file that can give a required audio quality. This is for use with subjective tests, such as MUSHRA, where an anchor is required of a particular quality.
RmiR is an R package for the analysis of microRNA and gene expression microarrays.
The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...