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This program minimizes boolean expressions. After combining minterms as far as possible, the program draws a chart of prime implicants which the user can easily read and manipulate to remove any remaining superfluous implicants.
Interface to collect data from a Consort R305 unit via RS-232. It allows to record data from 2 units with a total of 4 channels. The graphical interface displays the value of the channels as graphs and saves them in a CSV file.
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PyQwt = FAST and EASY data plotting for Numerical Python and PyQt.
PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework
with widgets to display and control data for scientific and engineering applications.
Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt
Educative desktop application that it's main goal is develop any kind of mathematical operation in an easy and quick way. It's focus to users that don't have programming knowledge.
--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
Naimath (syn. blessing) is a project to create tools for diagnosis, management of clinical cases in the form of Rule based Medical Expert System integrating Interactive Health education, Semantified EMR, and serve as a learning tool for students. Website seen at www.naimath.com
Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
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NOTE: We have moved the project to https://bitbucket.org/makokal/openprm/overview, all the code that is still in sf is not maintained anymore. please use the new code at the location given
This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.
In Systems Biology models are created in various formats (Matlab, Java, C/C++, Python, ...). "Annotate Your Model" will help you to link your model to biological web resources by creating a CSV file containing MIRIAM annotations.
MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
Blaze is an application launcher that distinguishes from amongst the others by being able to automate recurrent tasks performed in the file-system or even any application on Microsoft Windows.
Pinkl is a library written to build flexible applications to control instruments connected to a computer using a GPIB or COM interface and take, store and plot measurements with these instruments.
MLboost: Machine Learning boost library in Python. MLboost main goal is to speedup any Machine Learning projects by simplifying data preprocessing, features selection and data visualisation. Design by Machine Learning practitioners to let them do ML...;)
qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
ReliaFree is a Python and PyGTK based suite of tools to assist in Reliability, Availability, Maintainability, and Safety (RAMS) analyses. ReliaFree is intended to be an Open Source alternative to proprietary RAMS analyses solutions.
This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
The OpenFire processor is a Xilinx MicroBlaze-compatible processor being modified for use in Cyber Physical Systems research. This material is based upon work supported by the National Science Foundation under Grant No. CPS-0932113.
This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.
This is a unix distribution I made so that I can develop from anywhere--a virtual desk if you will. Some of my friends and colleagues have found it useful, and an easily accessible place to put the operating system up is on the internet.