Showing 200 open source projects for "time code"

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  • 1

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    ...We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. Our approach achieves on average 97.0% linkage accuracy across all species and imaging modalities." *Please cite this paper if you use this code for your research
    Downloads: 1 This Week
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  • 2
    C/C++ Program Perfometer

    C/C++ Program Perfometer

    The program enables to get performance of C/C++ program for any metric

    The program enables to get performance of C/C++ program and separated pieces of code for any metrics (for instance : time, memory, metrics defined by user etc.). The measurement results are represented in detailed/summary reports. Latest Version: 2.10
    Downloads: 1 This Week
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  • 3

    OVATION Prime

    Seasonal model of the diffuse, monoenergetic, proton, and wave aurora.

    ...The OVATION Prime model is written in IDL and was developed at the Johns Hopkins Applied Physics Laboratory (JHU-APL) by Patrick Newell and co-workers. This current version includes updates to the retrospective and real time components, several efficiency enhancements and a user configuration as implemented by Rob Redmon and Janet Machol of NOAA. This is a community model. Users are invited to suggest and provide improvements. Documentation includes a model description and instructions for running the software. The README is available here: http://sourceforge.net/p/ovation-prime/code/HEAD/tree/trunk/README.pdf?...
    Downloads: 1 This Week
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  • 4
    fPotencia

    fPotencia

    Power flow library in C++

    ...fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure.
    Downloads: 0 This Week
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  • 5
    igafem

    igafem

    Open source 3D Matlab Isogeometric Analysis Code

    Isogeometric analysis (IGA) is a fundamental step forward in computational mechanics that offers the possibility of integrating methods for analysis into Computer Aided Design (CAD) tools and vice versa. The benefits of such an approach are evident, since the time taken from design to analysis is greatly reduced leading to large savings in cost and time for industry. The tight coupling of CAD and analysis within IGA requires knowledge from both fields and it is one of the goals of the MIGFEM is to provide a simple-to-understand IGA FEM code. The work is funded under the FP7 Initial Training Network Funding under grant number 289361 'Integrating Numerical Simulation and Geometric Design Technology.' ...
    Downloads: 3 This Week
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  • 6
    RoboComp
    RoboComp is a robotics framework providing a set of open-source, distributed, real-time robotic and artificial vision software components and the necessary tools to create and manage them.
    Downloads: 0 This Week
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  • 7
    Biogenesis X Mod

    Biogenesis X Mod

    Mod of the evolution simulation and artificial life program Biogenesis

    This project is a modification of the original evolution simulation & artificial life project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ In both, the original project and this modification, 2-dimensional organisms consisting of line segments interact with each other, reproduce and evolve in time. Compared to the original project, this modification explores the following features: * alternative mutation mechanisms * an alternative stress-based aging mechanism It is based on the new_design branch of Biogenesis (https://sourceforge.net/p/biogenesis/git/ci/new_design/tree/), its source code can be obatained from http://sourceforge.net/p/biogenesisxmod/code/ci/xmod/tree/ If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. ...
    Downloads: 0 This Week
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  • 8

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and...
    Downloads: 0 This Week
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  • 9
    MDDriver
    [OBSOLETE, check Github repository: https://github.com/LBT-CNRS/MDDriver) MDDriver is a library allowing a user to easily couple molecular visualisation tools with simulation code through a network. It allows to carry out interactive molecular dynamics, visualize simulation results and drive a simulation in interactive time.
    Downloads: 1 This Week
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  • 10
    MXLib is a C++ wrapper around the Intel® Integrated Performance Primitives (IPP) library and NVidia NPP CUDA library. You can use either IPP code (or a subset of functions that do not require IPP) on the CPU side, or use NPP/CUDA on the GPU side, or use both together. The function syntax is similar to that found in MatLab and the library is designed to make it easy to port your code from MatLab to C++. The idea is to provide Scientists, Engineers, Researchers and other non full-time programmers an easy to use, high performance library of functions.
    Downloads: 0 This Week
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  • 11
    Scopino

    Scopino

    Arduino Oscilloscope

    Oscilloscope application for Arduino & .NET. Includes full source code. Version 2 features sampling rate x10.
    Downloads: 2 This Week
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  • 12

    TIDES

    Taylor series Integrator for Differential Equations

    Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5....
    Downloads: 0 This Week
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  • 13
    CommandCentre

    CommandCentre

    Command Centre

    ...The Command Centre is a Simulation Programming Framework for advanced Command and Control Simulators on Linux/Windows using C/C++ and Java. The Framework integrates with Leading Tools like Visual Paradigm (UML), Net Beans 7.0 (Java), and Code Warrior (C/C++). The codebase supports building Heterogenous Command and Control Consoles and Accelerated User Attached Audiovisuals. The Command Centre Real Time Simulation Framework (under RT Linux) allows designers to build Fast Prototyped Consoles for advanced Simulations running on Local Area Networks.
    Downloads: 0 This Week
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  • 14
    GoIFISH

    GoIFISH

    for the semi-automated analysis of IFISH images

    GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment....
    Downloads: 1 This Week
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  • 15
    NanoCap

    NanoCap

    Carbon Fullerene and Capped Nanotube Generator

    NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the...
    Downloads: 7 This Week
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  • 16
    Energistics Transfer Protocol

    Energistics Transfer Protocol

    Real-time Low Latency High-Frequency data streaming API

    This project contains the working artifacts for the development of the Energistics Transfer Protocol. There is NO Wiki. To review documentation, clone or download the repository and look in the documentation directory. You can access on line using the [Browse Code] button.
    Downloads: 0 This Week
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  • 17
    q pipeline manager

    q pipeline manager

    q: integrated platform for pipeline configuration and management

    The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently...
    Downloads: 2 This Week
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  • 18
    Displays four-dimensional objects and functions by projecting them into three-dimensional space. Viewpoint transformations and parameter changes are displayed in real time. THE PROJECT'S CODE BASE HAS BEEN MOVED TO GITHUB: https://github.com/lene/HyperspaceExplorer The Git repository on SourceForge will be kept in sync with GitHub at least for the time being, but for the latest commits you should check the GitHub Project. If you want to report a bug or a feature request, please use the GitHub issue tracker at https://github.com/lene/HyperspaceExplorer/issues
    Downloads: 0 This Week
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  • 19

    Time-Evolving Block Decimation

    TEBD simulates the dynamics of entangled quantum many-body systems.

    ...Expectation values and correlation functions, as well as entanglement measures and entropies, can be calculated. By propagating in imaginary time, TEBD can also be used to find the ground state of a given Hamiltonian. The code supports arbitrary internal degrees of freedom, and has been optimized to conserve total particle number. Accompanying the code is a user's guide which provides background on the theoretical and conceptual foundations of TEBD, manpages, case studies of well-known hamiltonians, and exercises.
    Downloads: 0 This Week
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  • 20

    VOpR

    VOpR - a virtual optical rail

    ...Currently the database can store data about: -optical materials, -spherical lenses, -projection properties of light sensors and eyes, -special wavelengths of light and -optical systems as lists of basic optical elements. 2. The editor of linear optical systems. Some properties of the optical system are calculated in real time. 3. The virtual optical rail as a ray-tracing simulation of the optical system. The goal is to provide fast and useful diagnostic images, not realistic blur. Additionally there is full access to the java source code under the terms of the GPLv3.
    Downloads: 0 This Week
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  • 21
    MoleCalc

    MoleCalc

    A molecular weight calculator written in Visual Basic.

    A molecular weight calculator written in Visual Basic. Unfortunately, it is only for 64-bit Windows at this time. The code files (.sln) are downloadable only. I can't figure out Git.
    Downloads: 0 This Week
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  • 22

    BriCS

    SaaS for running simulation models in the cloud

    ...BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. Why wait days or weeks for a series of trials to complete when you can run them in parallel in the time it takes to complete one?
    Downloads: 0 This Week
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  • 23
    SAS macros and sample code for stratifying (and aggregating) data according to time-varying covariates. Especially useful for Poisson regression, Cox regression and calculating standardised incidence ratios.
    Downloads: 0 This Week
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  • 24

    MCL

    A C++ library mirroring some of the most common Matlab functions.

    MCL is a C++ library that implements many of Matlab's functions. The library is written so as to minimise the time needed to port Matlab code to C++. The main point of departure between the two is that c++ requires the definition of the types you are using. In MCL we have three types: Real, Int, Complex. Furthermore, vectors start from 0 instead of 1. The library has been written following Google's C++ style guide: http://google-styleguide.googlecode.com/svn/trunk/cppguide.xml
    Downloads: 0 This Week
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  • 25
    Matlab VideoUtils

    Matlab VideoUtils

    Matlab Toolbox for reading and writing videos.

    Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay tuned for updates, you can follow the Matlab VideoUtils on Twitter (@VideoUtils): https://twitter.com/#!...
    Downloads: 0 This Week
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