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  • 1
    alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to python thus permitting easy scripting of complex tasks. Alignlib has moved to github (https://github.com/AndreasHeger/alignlib)
    Downloads: 0 This Week
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  • 2
    Kontroller for MATLAB DAQ

    Kontroller for MATLAB DAQ

    KONTROLLER HAS MOVED: https://github.com/sg-s/kontroller

    kontroller has moved: https://github.com/sg-s/kontroller
    Downloads: 0 This Week
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  • 3

    gcr_convert

    converts cosmic-ray files from GALPROP for viewing / plotting.

    The GALPROP program (http://galprop.stanford.edu) computes cosmic-ray propagation in the Galaxy, in 2D or 3D. The ouput cosmic-ray distribution is in the form of FITS files which however are not convenient for viewing or plotting with the standard ftools program fv, since the files have 4 or 5 dimensional arrays (due to the momentum and species axes) while fv handles only 3 dimensional arrays. This program converts to fv-compatible FITS files, either from 2D to (R,z) or from 3D to (x,z) at...
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  • 4
    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
    Downloads: 0 This Week
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  • AI-generated apps that pass security review Icon
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  • 5
    Wedge is a C++ library based on GiNaC for symbolic computations in differential geometry. The project webpage has moved to https://github.com/diego-conti/wedge
    Downloads: 0 This Week
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  • 6

    BioLemmatizer

    Lemmatization tool for morphological analysis of biomedical literature

    ...It focuses on the inflectional morphology of English, including the plural form of nouns, the conjugations of verbs, and the comparative and superlative form of adjectives and adverbs. README: https://sourceforge.net/projects/biolemmatizer/files/ The BioLemmatizer 1.2 release adds an optional functionality to normalize British English spellings into American English spellings and then retrieve corresponding lemmas. If you use the BioLemmatizer to support academic research, please cite the following paper: Haibin Liu, Tom Christiansen, William A Baumgartner Jr, and Karin Verspoor BioLemmatizer: a lemmatization tool for morphological processing of biomedical text Journal of Biomedical Semantics 2012, 3:3.
    Downloads: 4 This Week
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  • 7
    Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
    Downloads: 0 This Week
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  • 8
    GISBox by Citiviz

    GISBox by Citiviz

    Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...

    ...The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software (https://www.virtualbox.org/) on your Linux, Windows or Mac computer. The GISBox is free and open, allowing it to be freely distributed, duplicated and passed around, even with your own datasets and in-house applications. If you read this and are related to the Ecole polytechnique de Lausanne - EPFL (http://www.epfl.ch) in Switzerland, please use this link for downloading or support information: http://gisbox.epfl.ch. ...
    Downloads: 1 This Week
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  • 9
    TMVA Toolkit for Multi Variate Analysis

    TMVA Toolkit for Multi Variate Analysis

    A ROOT-integrated toolkit for multivariate analysis

    ...TMVA performs the training, testing and performance evaluation of a large variety of multivariate methods. Since 2013, TMVA has been fully integrated with ROOT and is distributed as part of it. The new homepage of TMVA is https://root.cern
    Downloads: 0 This Week
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  • 10
    ...Code will remain here as an archive of processing methods that were applied to published data using PipeDream. If you are looking for data organization and pre-processing code, please see the new version of PipeDream on GitHub: https://github.com/cookpa/pipedream It is still very much a work in progress but has dicom2series, dicom2nii, nii2dt. If you are looking for a T1 processing pipeline, please see antsCorticalThickness.sh in the latest version of ANTs: https://github.com/stnava/ANTs The old PipeDream "antsbrainprocessing.sh" was a protoyype for antsCorticalThickness.sh.
    Downloads: 0 This Week
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  • 11

    galprop_propel

    GALPROP update for accurate propagation calculation

    The GALPROP program (http://galprop.stanford.edu) computes cosmic-ray propagation numerically. To obtain manifestly accurate solutions an explicit method is now available to replace the Crank-Nicolson operator-splitting method. This can be implemented in the public version of GALPROP with the update provided here. Instructions: replace the four files propel.cc, propel_diagnostics, Galdef.cc and Galdef.h and rebuild the executable. Add solution_method and solution_convergence to the galdef...
    Downloads: 0 This Week
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  • 12
    Correct-O-Chem

    Correct-O-Chem

    Converts chemical formulae into their correct notation.

    ...New to Version 2.11: -(Remember to run Correct-O-Chem as admin - Right-click on the "Correct-O-Chem" executable and select Properties, Compatibility and tick Run as administrator) -Updated "Help" menu -Codon Calculator -Provides an input box (in any window) that enables you to enter either a codon or amino acid (name, 3 letter identifier or 1 letter identifier - NO SPACES) and displays the corresponding amino acid/codons. ctrl+` (the button to the left of the "1" - not apostrophe) or right-clicking on the tool tray icon and selecting Codon Calculator will activate the pop-up box. - Go to "https://code.google.com/p/correct-o-chem/" for a detailed "Read-Me"
    Downloads: 0 This Week
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  • 13
    HELP TARZAN

    HELP TARZAN

    A mathematical skill testing game specially for the kids.

    ...id=30653 or, http://www.filehippo.com/download_dotnet_framework_4/ If you have .NetFramework 3.5 then you may use the portable file / zipped file. Homepage: https://sourceforge.net/p/helptarzan Version: 1.0.0 Release date: September 26, 2013 Download info: For play HELP TARZAN you can download any one of them. 'HELP TARZAN 1.0.0 Windows Portable.zip' is Portable(No need to install). 'HELP TARZAN 1.0.0.msi'(You have to install it) Developer: Md. Musabbir Al Mamun Contact: musabbir.mamun@gmail.com http://www.facebook.com/musabbir.mamun cell no. +8801913088885 or +8801726315133 ID: CE-10021, Dept.of CSE, MBSTU. ...
    Downloads: 0 This Week
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  • 14
    Clover

    Clover

    a simple lab information management system (LIMS)

    ...It provides an easy way to manage and handle the information of lab material, catalogs (inventories), and orders. USE PHP 5.*! Clover will not work on PHP 7.*! The wiki page contains detailed help documents: https://sourceforge.net/p/cloversystem/wiki/Home/ For lab instrument scheduling, please use Cloveriver: https://sourceforge.net/projects/cloveriver/ Please do NOT store passwords using your browser. This does not work for Cloveriver, because it encodes your passwords before send to the server for verification. Please rate, like, share, and tweet, if you like this program!
    Downloads: 0 This Week
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  • 15
    yaMatO

    yaMatO

    Finding the hyper space particle :d

    Merging neuronal nets with attractor visualisation to show the unknown particle, which makes travel much faster. https://projects.zoho.com/portal/surfingjoomla#myworkcalendar
    Downloads: 0 This Week
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  • 16
    Better PO Editor is an editor for .po files, used to generate compiled gettext .mo files which are used by many programs and websites to localize the user interface. It offers great features... It's worth to give it a try! PLEASE NOTE: the project moved to GitHub: see https://github.com/mlocati/betterpoeditor/releases
    Downloads: 3 This Week
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  • 17
    This is the former home of pyecm, which has now been moved to github: https://github.com/martingkelly/pyecm Pyecm factors large integers (up to 50 digits) using the Elliptic Curve Method (ECM), a fast factoring algorithm.
    Downloads: 0 This Week
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  • 18

    RESPOND-R

    RESPOND-R Test Instrument

    The RESPOND-R framework is a modular, distributed data logging framework built for the purpose of studying Emergency Informatics as it relates to human robot performance during disaster responses. Tutorials can be found on the wiki: https://sourceforge.net/p/respondr/wiki/
    Downloads: 0 This Week
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  • 19
    TikiOne JaCoCoverage

    TikiOne JaCoCoverage

    Java (6&7) Code Coverage Plugin for NetBeans, based on JaCoCo

    ...For Ant based JavaSE projects. Maven and Gradle support may be added later. WARNING: Binary files have been removed. They're now on a NetBeans update center. Please check https://github.com/jonathanlermitage/tikione-jacocoverage#download-stable-and-dev-builds for details. ~Jonathan Lermitage <jonathan.lermitage@gmail.com>
    Downloads: 0 This Week
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  • 20
    A Python package with bindings to the "Virtual Instrument Software Architecture" VISA library, in order to control measurement devices and test equipment via GPIB, RS232, or USB. Note: Development of PyVisa moved to github https://github.com/hgrecco/pyvisa This page is of historical interest only!
    Downloads: 3 This Week
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  • 21

    LanguageTool

    Proofreading Software for 20+ Languages

    LanguageTool is an Open Source language/grammar checker. *** THIS REPOSITORY IS OUT OF DATE, see https://github.com/languagetool-org INSTEAD ***
    Downloads: 0 This Week
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  • 22
    ParaSim

    ParaSim

    Parallelized calculation of molecular similarities

    ...It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. FEEDBACK HIGHLY APPRECIATED!
    Downloads: 0 This Week
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  • 23

    fit2dcorr

    SAXS 2D > 1D data reduction software, wrapper for Fit2D

    The project's repository has moved to github. Please use the repository at https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/fit2dcorr for the new updated versions. The old version is kept at sourceforge. Keywords: fit2d SAXS azimuthal averaging batch processing absolute units (exposure time, transmission, sample thickness) error bars C++ Unix OpenMP
    Downloads: 0 This Week
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  • 24

    Ada Lapack

    A partial port of Lapack to Ada 2012

    ...The code is written in the form of a generic package and covers the Lapack routines for - Matrix determinant and inverse on general matrices, - Eigenvalues and eigenvectors of general, real and hermitian symmetric matrices, - Solutions of systems of equations for general, real and hermitian symmetric coefficient matrices, - Singular value decomposition for general matrices Also included is a set of functions (and two procedures) that provide a more familiar Ada style interface to the Lapack routines. See also AdaLAPACK (https://sourceforge.net/projects/adalapack/), a binding to the Fortran LAPACK.
    Downloads: 0 This Week
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  • 25
    is-sfe

    is-sfe

    Information System "Supercritical Fluid Extraction"

    ...The final target is to help to scientists who worked with supercritical fluids to predict some useful properties such as density, solubility etc. In order to calculate molecular descriptors, parse SMILES and another applied purposes is used Chemistry Development Kit (https://sourceforge.net/projects/cdk).
    Downloads: 0 This Week
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