Search Results for "tiny-workflow" - Page 4
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Showing 151 open source projects for "tiny-workflow"
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fPotencia
Power flow library in C++
fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. ... -
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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The library computes the greatest common divisor of two univariate integer polynomials, whose coefficients are represented by multiple-precision integers provided by the GMP library. I wrote the code originally for CGAL, in 2007, but it was later removed for maintenance reasons.
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Erda
Workflow automation of Thomas networks
This script is supplementary to the article "Time series dependent analysis of unparametrized Thomas networks" and performs the workflow steps described in section 7. -
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SeqSelector
Tools to select sequences for capture enrichment of next-gen libraries
The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to genome sequences of model or non-model species. We suggest a workflow in which genes of interest are first identified from previous studies and publicly available datasets of functional gene annotation. Once a list of candidate genes has been identified, their sequences are selected from the reference genome. These sequences are used as a query during a BLAST search of the unannotated genome of a non-model species, and then the corresponding sequences are returned, which can be used to design baits for hybridization-based sequence capture. -
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A small and optimized C library for the ASURO platform. A small ASURO-compatible bootloader is also included. ##### Eine optimierte kleine C-Bibliothek für die ASURO-Plattform. Zum Umfang gehört außerdem ein ASURO-kompatibler Bootloader.
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wepro
A tiny app for getting the weather.
A Java application designed specifically to display the weather content at a specified location. This applet is designed specifically to utilize a diversity of modern Software Engineering best practices. We plan for this application to be open source, extensible, and reusable. We also plan for the weather app to utilize multiple data providers, or website urls that provide weather information freely, so that a user can chose which provider dynamically during the runtime of the application. -
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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Fish4Knowledge Project
Analysis of undersea fish videos
The Fish4knowledge project investigated: information abstraction and storage methods for analyzing undersea video data (from 10E+15 pixels to 10E+12 units of information), machine and human vocabularies for detecting & describing fish, flexible process architectures to process the data and scientific queries and effective specialised user query interfaces. A combination of computer vision, database storage, workflow and human computer interaction methods were used to achieve this. The project used live video feeds from 10 underwater cameras as a testbed for investigating more generally applicable methods for capture, storage, analysis and querying of multiple video streams. We collated a public database from 3 years containing video summaries of the observed fish and associated descriptors. ... -
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Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.
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iBRAIN2 Workflow Manager
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management. It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets. -
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time. -
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ATMSP
ATMSP - A Tiny Mathematical Speed Parser
A Tiny Mathematical Speed Parser ATMSP is a portable C++ parser for mathematical expressions like "sin(x)+y^2" e.g. These may contain arbitrary numbers of functions, variables and constants. Major design goal was minimalistic size and maximum speed. Tiny 320 code-lines offer a parser plus bytecode-generator, 26 mathematical functions and 17 supported base-types including complex and arbitrary MPFR-multiprecision. -
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Atarrabi
A web-based workflow application for publishing environmental data
Atarrabi is a web-based workflow application used for preparing meteorological research data for persistent identifier registration. This software will not run out-of-the-box. Please visit our web site and contact us to learn more. -
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The Enterprise Science Processing Architecture is a modular science processing system that encourages code reuse. It is based on the Chain of Responsibility and strives to remain simple and sparse to support the widest possible community of users.
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ADOPS
Automatic Detection Of Positively Selected Sites
ADOPS is a bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data. ADOPS implements a complete workflow that integrates three well-known bioinformatic tools: T-Coffee, MrBayes and Codeml (PAML). -
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I159269S
Use of iso15926 part 9 in an sample engineering workflow.
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ClearCanvas
Open source DICOM and RIS/PACS informatics platform
Open source code base for enabling software innovation in imaging. The extensible and robust platform includes viewing, archiving, management, workflow and distribution of images as well as an open architecture for core competency tool development. -
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Tinybldlin is a GNU/Linux port written in python for Tiny PIC Bootloader (tinybldWin.exe) for Microchip PIC microcontrollers.
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tiny-DSP library
small and fast library dealing with signal processing
Tiny-DSP library contains c sources of a fast, tiny, portable and generic FFT (Fast Fourier transform) and inverse FFT. Supported are all power of two sizes (like 2,4,8,16,32,...) for one and two dimensional floating point arrays. -
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MCloudSim/NovaCloudSim
a distributed cloud simulator written in Java
...MCloudSim has following characteristics: (1) The overlay protocol can be freely replaced, and we have already ported Pastry, Kadmelia, Chord from PeerSim; (2) A Petri-Net workflow theory based task model is implemented to simulate distributed tasks; (3) A distributed cloud can be easily built by assembling and expanding the basic resource entities provided by the simulator. (4) ... If you have any questions, please contact nova@dsp.ac.cn. -
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FPGAsm
Create fast bare-metal FPGA designs without Verilog or VHDL
...Now you can focus on learning the ins and outs of the FPGA instead of complex tools and languages. Fast turnaround time and bottom-up approach invite exploration, experimentation, live circuit testing and physical test harness creation, radically changing the workflow. FPGAsm offers you an opportunity to REALLY understand Xilinx FPGAs, create circuits DIRECTLY on the FPGA using an opensource tool, and share your knowlege and projects with the community. Supported architectures: Xilinx (via xdl) -
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blutle
Small wireless board to control tiny DIY toys over bluetooth
Being powered with cell phone battery, this board can drive small toys - up to two DC motors, several input/output pins, discharge control. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer -
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MicroStitcher
Tiny tool capable of stitching hundreds images into one single image
This is very small tool, which is capable of stitching hundreds of images into one single image. The main purpose of the tool is to stitch small pieces of map taken by screenshots for example from OpenStreetMap. The tool automatically calculates relative positions of every single patch. A single patch has to have considerable amount of margins that are required to find control points that will match a pair of patches.
