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  • 1

    FPF_predict

    Fine Particle Fraction (FPF) predictor

    Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN
    Downloads: 0 This Week
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  • 2
    NOTICE: The current version of Schnek is hosted on GitHub https://github.com/holgerschmitz/Schnek This repository on Sourceforge is no longer maintained! For examples of the use of Schnek, please look at the documentation of Schnek http://www.notjustphysics.com/schnek/schnek-documentation/
    Downloads: 0 This Week
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  • 3

    HiLive

    Realtime Alignment of Illumina Reads - old repo

    Please note that this repo is outdated! Please find the latest version of HiLive here: https://gitlab.com/SimonHTausch/HiLive
    Downloads: 0 This Week
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  • 4

    Ontology of Microbial Phenotypes (OMP)

    Ontology for annotating phenotypes of microbes for genetic research

    CURRENT VERSIONS OF OMP ARE AVAILABLE AT: https://github.com/microbialphenotypes/OMP-ontology A phenotype is the expression of an organism's genotype in an environment. Both variation in gene expression and changes in genetic makeup can result in different phenotypes in one environment; conversely, environmental variation can yield different phenotypes in genetically identical organisms.
    Downloads: 0 This Week
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  • 5
    OneLDAP is a limited LDAP server that is a proxy to other common protocols, such as POP3 and IMAP. It provides basic SEARCH and BIND functions for standard LDAP authentication. It is based on the shell backend function of OpenLDAP. Release files are available at the project website.
    Downloads: 0 This Week
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  • 6
    opticks
    UPDATE March 14, 2018 Repository and tracking officially moved to github. https://github.com/opticks-org/opticks Sourceforge mailing lists are still in use. Opticks is an open source remote sensing application and development framework.
    Downloads: 0 This Week
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  • 7
    ASN.1 library for Python
    ASN.1 types and codecs (BER, CER, DER) implementation in Python programming language. A collection of various ASN.1-based protocols data structures is supplied in a dedicated Python package. Project moved to GitHub: https://github.com/etingof/pyasn1
    Downloads: 0 This Week
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  • 8
    Simox
    Simox has moved to gitlab. Please update your URLs: https://gitlab.com/Simox/simox A platform-independent robot simulation, motion and grasp planning toolbox consisting of three modules: VirtualRobot to simulate and visualize robots, Saba the sampling-based motion planning library and GraspStudio for grasp planning.
    Downloads: 1 This Week
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  • 9
    MassWiz

    MassWiz

    Proteomics MS/MS database search engine

    Open Source MS/MS algorithm with integrated target-decoy based FDR. Reference- http://pubs.acs.org/doi/abs/10.1021/pr200031z , Check out the wiki site for help and support - https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=Main_Page
    Downloads: 5 This Week
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  • 10
    Flexbar

    Flexbar

    flexible barcode and adapter removal for sequencing platforms

    Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform.
    Downloads: 0 This Week
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  • 11

    mwetoolkit

    THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/

    THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics.
    Downloads: 0 This Week
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  • 12
    ATTENTION! Morfologik is now at GitHub: https://github.com/morfologik/
    Downloads: 0 This Week
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  • 13

    Madeline 2.0 Pedigree Drawing Engine

    Madeline 2.0 Pedigree Drawing Engine (PDE)

    The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. PLEASE NOTE THAT as of 2015.09.30, the most current Madeline source code tree is now maintained on GITHUB at https://github.com/piratical/Madeline_2.0_PDE .
    Downloads: 0 This Week
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  • 14
    ...It is composed of 40K aligned articles, 91.3M English words, 57.8M French words, 22M Arabic words, 2.8M English unique words, 1.9M French unique words, and 1.5M Arabic unique words. Wikipedia text is available under Creative Commons Attribution-ShareAlike 3.0 License. https://en.wikipedia.org/wiki/Wikipedia:About To cite the corpora: M. Saad, D. Langlois, and K. Smaïli. Extracting Comparable Articles from Wikipedia and Measuring their Comparabilities. Procedia - Social and Behavioral Sciences, 95(0):40 – 47, 2013. ISSN 1877-0428.
    Downloads: 0 This Week
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  • 15

    libznz with zindex

    This is a fast version of libznz used in NIfTI C library

    ...To reach the expected speed-up the compressed NIfTI data has to be indexed with the included tool. To compile the binaries, the sources available in this project have to be replaced with the ones in znzlib folder of project https://sourceforge.net/projects/niftilib/files/nifticlib/nifticlib_2_0_0/ and the nifticlib has to be compiled.
    Downloads: 0 This Week
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  • 16
    FermiFab
    Repository moving to https://github.com/cmendl/fermifab ! A quantum physics toolbox for small fermionic systems. Keywords: quantum mechanics, reduced density matrices, Slater determinants, second quantization, creation and annihilation operators
    Downloads: 0 This Week
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  • 17
    vcftools
    A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
    Downloads: 60 This Week
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  • 18
    Mutation Mapper
    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/MutationMapper) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/MutationMapper/releases/latest). Predict functional consequences of mutations identified from sanger sequencing.
    Downloads: 0 This Week
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  • 19

    PNGwriter

    Easy plotting of images pixel by pixel!

    ...Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than 0.5.5. The PNGwriter website is still hosted on SourceForge.net: http://pngwriter.sourceforge.net Thank you! @individual61 @ax3l
    Downloads: 0 This Week
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  • 20

    bsclient

    An interactive FTP-like command-line BaseSpace download client

    ...It has a simple interface simliar to FTP and can be used to easily download files onto a remote server or in any situation when the web-based interface is not accessible or desirable. Please note that current development on this project has moved to GitHub: https://github.com/jvolkening/bsclient
    Downloads: 0 This Week
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  • 21

    EyeBallGUI

    a tool for interactively viewing & marking multi-channel biosignals

    ...EyeBallGUI is based in MATLAB® and works in Microsoft Windows. Proficiency in MATLAB is not required to use EyeBallGUI. It can be used either as a stand-alone MATLAB-based tool or as an EEGLAB plugin. Please cite using: https://doi.org/10.1101/129437
    Downloads: 0 This Week
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  • 22
    AEO-Light 1.1

    AEO-Light 1.1

    Version 1.1 is no longer supported.

    Version 1.1 is no longer supported. Please see the new version at https://usc-imi.github.io/aeo-light/ Description for 1.1 continues below: AEO-Light 1.1 is an open-source software application that takes a digital scan of motion picture film with optical sound tracks and directly reproduces the audio, producing as a result a synchronized sound film file. Funded by a grant from the National Endowment for the Humanities and by the University of South Carolina.
    Downloads: 0 This Week
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  • 23
    FluidEarth
    Open source development for FluidEarth (https://fluidearth.net/default.aspx) which supports the OpenMI Standard (http://openmi.sourceforge.net) Here are OpenMI Association approved applications.
    Downloads: 0 This Week
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  • 24

    LDhat

    Estimate Recombination Rates from Population Genetic Data

    LDhat is a package written in the C language for the analysis of recombination rates from population genetic data. This package has migrated to github: https://github.com/auton1/LDhat
    Downloads: 0 This Week
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  • 25
    EXMARaLDA
    ...It's a system of concepts, data formats and tools for the computer assisted transcription and annotation of spoken language, and the analysis of spoken language corpora. This project's source code has moved to https://github.com/Exmaralda-Org/exmaralda
    Downloads: 0 This Week
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