Showing 2657 open source projects for "sql command line"

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  • 1
    starrynite is an image analysis tool for tracking fluorescently-labeled nuclei during C. elegans embryogenesis.
    Downloads: 2 This Week
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    Automalator

    State Dependency deconstructor and mapper for C source code.

    ...Pre-requisites * Perl - tested with versions 5.12.3, 5.14.2 and 5.20.2, Windows, Linux and MAC * Get the Automalator by downloading the zip, or checking out or exporting the SVN trunk * copy the source code of interest into "project.c" * windows - double-click "src2map.bat" * linux & MAC - navigate the command line to the "project" folder, then run "src2map.sh" * open "project.gml" file with diagramming software.
    Downloads: 0 This Week
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  • 3
    JMCAD - modeling of dynamic systems
    JMCAD is an program for the modeling and simulation of complex dynamic systems. This includes the ability to construct and simulate block diagrams. The visual block diagram interface offers a simple method for constructing, modifying and maintaining complex system models. The simulation engine provides fast and accurate solutions for linear, nonlinear, continuous time, discrete time, time varying and hybrid system designs. With JMCAD, users can quickly develop software or "virtual"...
    Downloads: 2 This Week
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  • 4

    IRST LM Toolkit

    A toolkit for language modeling.

    IRSTLM is no more supported on SourceForge. Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation...
    Downloads: 3 This Week
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  • 6
    Pheno Analysis is a sequential data assimilation framework for use with prognostic phenology models. It uses MODIS satellite data to constrain model parameters and states.
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  • 7

    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand proteins' : 1. ...
    Downloads: 0 This Week
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  • 8

    SAMSVM

    A tool for misalignment filtration on SAM-format sequences with SVM

    Applying the LIBSVM, a package of support vector machine, SAMSVM was developed to correctly detect and filter the misaligned reads of SAM format. Such filtration can reduce false positives in alignment and the following variant analysis.
    Downloads: 0 This Week
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  • 9
    LUNUS software for generating 3D maps of diffuse scattering from macromolecular X-ray crystallography diffraction images. Also see http://lunus.sourceforge.net
    Downloads: 0 This Week
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  • 10
    A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement...
    Downloads: 0 This Week
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  • 11

    OpenTRV

    Open-Source Thermostatic Radiator Valve

    Retrofit completely-open reference mechanical/hardware/software design for zoned heating control not relying critically on any proprietary/hacked components. The aim is to include at least one complete mechanical and software design for a replacement TRV head that can be retrofitted without any plumbing plus at least one simple boiler control to allow end-to-end open soft heating zoning, with the ability to connect to home automation system or the Net if required.
    Downloads: 0 This Week
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  • 12
    Provides auxiliary tools for the Monte Carlo particle transport code FLUKA (www.fluka.org).
    Downloads: 0 This Week
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  • 13
    A More Accurate Fourier Transform

    A More Accurate Fourier Transform

    Computes Accurate Fourier Transform via Explicit Integration not FFT

    ...It has been shown recently that EI methods can be more accurate than FFT methods (Courtney and Courtney, A More Accurate Fourier Transform) for scientific data analysis and that EI methods can be implemented in reasonable times with modern computing power. This project makes the source code (and command line Windows executable) developed in that study openly available for scientific and engineering uses.
    Downloads: 0 This Week
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  • 14
    VErsatile Discrete Objects Simulation System, an interaction-based Discrete Element Simulation System.
    Downloads: 0 This Week
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  • 15

    SWAPHI-LS: Alignment on Xeon Phi Cluster

    Smith-Waterman long DNA sequence alignment on Xeon Phi clusters

    The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.
    Downloads: 0 This Week
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  • 16

    parSRA

    Portable Framework for the Parallel Execution of Short Read Aligners

    parSRA is a framework to execute short read aligners on compute clusters. It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration...
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  • 17
    An API for manipulating EDIF netlists in Java. We use this API to analyze netlists as a part of our FPGA reliability project. We intend to keep the API as general as possible to support other netlist analysis and manipulation activities. This material is based upon work supported by the National Science Foundation under Grant No. 0801876. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the...
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  • 18
    Libraries for integration of atmospheric trajectories. Includes a basic trajectory integrator, contour advection codes and semi-Lagrangian tracer simulations.
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  • 19
    VoIP Honey project provides a set of tools for building an entire honeynet, thus includes honeywall and honeypot emulating VoIP environments such as Asterisk PBX or OpenSer with fully configurable connections. Voip Honey runs on GNU/Linux and Windows Systems. It can be compiled for Mac OSX as well.
    Downloads: 0 This Week
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  • 20
    JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de
    Downloads: 14 This Week
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  • 21

    HTQC

    Quality control and filtration for illumina sequencing data

    A toolkit including statistics tool for illumina high-throughput sequencing data, and filtration tools for sequence quality, length, tail quality, etc..
    Downloads: 0 This Week
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  • 22
    This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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  • 23
    Adaptive Gaussian Filtering

    Adaptive Gaussian Filtering

    Machine learning with Gaussian kernels.

    Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation...
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  • 24
    msci

    msci

    Mad Science

    A bunch of miscillaneous scientific simulation projects not important enough to have their own project. Includes Gaspard-Rice chaotic scattering simulation, sea ice emissivity modelling, IDL library and any others I create or find kicking around.
    Downloads: 0 This Week
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  • 25
    rochePlot

    rochePlot

    Schematically plot the evolution of binary stars

    RochePlot is a Fortran code using PGPlot to plot a series of binaries to illustrate the key stages in the evolution of a binary star
    Downloads: 0 This Week
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