Showing 1879 open source projects for "program"

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  • 1
    BayesRate

    BayesRate

    Bayesian estimation of diversification rates

    BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae).
    Downloads: 0 This Week
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  • 2
    XASTIR

    XASTIR

    Multiplatform Ham Radio APRS and Mapping Program

    NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE.
    Downloads: 4 This Week
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  • 3
    VCF Explorer

    VCF Explorer

    A desktop application for analyzing whole genome VCF files

    ...Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory management of the program and the elimination of preliminary parsing step enable to carry out the analysis at ordinary computers. VCF-Explorer presents an easy to use environment where various types of queries for the annotation and the samples can be defined. VCF-Explorer can be run at different environments and computational platforms ranging from a standard laptop to an advanced server.
    Downloads: 4 This Week
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  • 4

    ooPorter

    A Porter stemming or stemmer algorithm coded in ooRexx

    ...This is not an example of good or fast (oo)Rexx programming, it is merely a demonstration of the Porter stemming routine ported to ooRexx, use and modify as necessary. Input to the program is a textfile with words to be stemmed, one per line. Output from the program ends up in the terminal window (standard out) and may be redirected to an output file. Syntax: rexx ooPorter myInputfile.txt > myOutputfile.txt The program only works for stemming English words. The source code is distributed under a free beer license; you are free to use the ooRexx source code as you please and no restrictions whatsoever apply as far as the type of beer is involved.
    Downloads: 0 This Week
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  • 5
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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  • 6
    trj_cavity finds protein cavities throughout Molecular Dynamics (MD) simulation trajectories. The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC. The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https://sourceforge.net/p/trjcavity/wiki/Home/#ffad If you need support using this tool (or report bugs), please post it in the discussion forum. ...
    Downloads: 3 This Week
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  • 7
    a program for astrodynamics, written in C++ include orbit propagator, formation, etc
    Downloads: 0 This Week
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  • 8

    LBM3fm

    LBM3fm - Lattice Boltzmann method for film flow modelling

    This program provides the moment method boundary condition treatment for multi-phase flow modelling with lattice Boltzmann methods. For feedback, leave a review, leave a comment on the discussion page or send me a private mail.
    Downloads: 0 This Week
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  • 9

    2d Heat advection Parallelized

    MPI based Parallelized C Program code to solve for 2D heat advection.

    Type - 2D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - MPI (for cluster environment) Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup: The left and top edges are heated to 100 C and the right and bottom...
    Downloads: 0 This Week
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  • 10

    3D Heat advection C code

    A C Program code to solve for Heat advection in 3D Cartesian grid.

    Type - 3D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY,LZ) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The left, top and inside plane boundary is at 100 C and the right, bottom and outside plane...
    Downloads: 0 This Week
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  • 11

    2D Heat advection C code

    A C Program code to solve for Heat advection in 2D Cartesian grid.

    Type - 2D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The left and top boundary is at 100 C and the right and bottom boundary is at 0 C. The flow is...
    Downloads: 0 This Week
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  • 12

    3D Heat convection C code

    A C Program code to solve for Heat convection in 3D Cartesian grid.

    Type - 3D Grid - Structured Cartesian Case - Heat convection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The top, bottom, front and back boundaries are heated to 100 C. The left boundary is inlet...
    Downloads: 0 This Week
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  • 13

    2D Heat convection C code

    A C Program code to solve for Heat convection in 2D Cartesian grid.

    Type - 2D Grid - Structured Cartesian Case - Heat convection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The top and bottom boundaries are heated to 100 C. The left boundary is inlet (Velocity = 1m/s...
    Downloads: 0 This Week
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  • 14

    nexbridge

    Makes Celestron mounts controlable over the network

    This this program transparently proxies the serial commands supported by the Celestron NexStar hand control over the network, so that the telescope can be controlled over the network. It is recommended to be used with libnexstar or NexStarCtl on the remote end. However it proved to be very useful for exporting all kinds of telescope mounts on the network like Sky-Watcher, Meade etc.
    Downloads: 0 This Week
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  • 15
    Function Plotter

    Function Plotter

    Plotting 2D mathematical functions

    Function Plotter is a simple-to-use application that provides you with a quick and easy solution for plotting 2D mathematical functions. No advanced mathematics or programming knowledge is required, and the program can draw functions in milliseconds. It's based on Qt 5.5.0, OpenGL 2.0, and muparser 2.2.5. A complete list of all supported functions and operators is available on the muparser library website: www.beltoforion.de/article.php?a=muparser
    Downloads: 0 This Week
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  • 16
    Buildes

    Buildes

    A designer’s program for describing parts of the building

    Buildes is an integrated development environment that assists the user in creating building information. It reads a text (session) file from which it compiles the information. It then allows the user to browse, analyze and export the resulting building knowledge. The compilation system is written in pure Python. The building components created are rendered in PythonOCC. The GUI is written using PyQt.
    Downloads: 0 This Week
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  • 17

    RGAAT

    Reference based genome assembly and annotation for new genome

    This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format).
    Downloads: 2 This Week
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  • 18

    REDO

    REDO - RNA Editing Detection in Organelle

    REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in...
    Downloads: 0 This Week
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  • 19

    Moon panorama 360

    Software to restore cyclorama (360 deg. panorama) from photos

    ...It was specially designed to restore panoramas obtained by Apollo missions in 1969-1972 but it can be used to restore any cyclorama from photos got in your tourist trip (for example). The main principle of the program is in projecting photos on a 360x360 sphere and combining it together. If you select a correct field of view (FOV) for photo images, its combination become ideal for distant points. For moon cyclorama it is also possible to check a Sun and Earth positions on the sky and to compare the result with a LOLA data (provided by the the LRO moon satellite).
    Downloads: 1 This Week
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  • 20
    Toss is a program which allows to explore the use of logic and terms in various models. On the static side, you can draw graphs and check their properties, axioms and reductions. Then, on the dynamic side, you can model multi-player games with both discrete and continuous dynamics. You can play the games, generate strategies automatically and analyse possible behaviours with respect to various logic formulas.
    Downloads: 0 This Week
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  • 21
    2DFLT

    2DFLT

    Program for Normalization, Averaging and Editing of In Situ Data Sets

    2DFLT it is first out of two programs which allows implementation of Phase Sensitive Detection (PSD) and/or Modulated Enhanced Diffraction (MED) techniques on the in situ data. This software allows collecting individual data files from in situ experiment into one dataset. After that this data set can be visualized, edited, normalized and averaged. Resulted data can be saved as one flat file (FLT-format) which can be used for PSD/MED calculations via 2DMED software...
    Downloads: 0 This Week
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  • 22
    AvrGui jest to program, który zajmuje się kompilacją i programowaniem kontrolerów. Wykorzystuje on kompilator avr-gcc. Zastosowanie biblioteki Qt umożliwia prace programu zarówno na systemach Linux, jak i windows.
    Downloads: 0 This Week
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  • 23

    Techne (R) CAD/CAM

    2.5D CAD CAM emphasis on CAM and toolpaths

    ...So you can create a square that will be machined at a specific depth but the depth will be constant accross the square. It is not/does not: A general purpose CAD (AutoCAD) type program. Support reference dimension on the drawing. Export or import major CAD file formats.
    Downloads: 4 This Week
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  • 24
    orbkit (Moved to Github)

    orbkit (Moved to Github)

    A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum

    PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided.
    Downloads: 1 This Week
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  • 25

    3d axisymmetric heat diffusion C code

    A C Program code to solve for Heat diffusion in 3D Axi-symmetric grid.

    Type - 3D Grid - Axisymmetric Case - Heat diffusion Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LR,LZ,LH) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup - Periphery heated to 500 C Top to 500 C Bottom to 500 C
    Downloads: 0 This Week
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