Search Results for "Databases Open Source & DevTools" - Page 2
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Showing 160 open source projects for "Databases Open Source & DevTools"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
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UIBM (= Universal Individual-Based Model) is an agent-based simulation/3d-dvisualization of the dynamics within multispecies plant communities of Northwest Europe, parameterized from databases using universal scaling laws.
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W1RETAP
one-wire data logger for weather stations
** Migration Notice ** This project is now hosted at https://codeberg.org/stronnag/w1retap.git. Files here are of historic interest only. w1retap is an application to log data from Dallas 'one wire' sensors to relational databases or files. It is developed on Linux, but should be portable to other POSIX systems. -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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The Phenoscape project attempts to formalize the description of evolutionary characters to make them interoperable and computable with the body of phenotype annotation being generated by model organism databases, and other biomedical research.
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH... -
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OzGIS free open-source mapping system
Analysis and display of Census, business, government attribute data
OzGIS is an extensive mapping system for the analysis and display of geographically referenced data. Map data are downloaded from Census bureaux and map agencies or extracted from your own databases. The system can be used to to support management decisions associated with, for example, government planning, marketing, sales, site and personnel location, advertising and research. Systems for Windows, Mac and Ubuntu, source code, sample data files and manuals are included. DOWNLOAD to... -
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FastaTools
Performs several operations to Fasta protein databases
...A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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openLCA
professional open source software for LCA
Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments. -
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JCVI VIGOR
Viral Genome ORF Reader
VIGOR (Viral Genome ORF Reader) is a perl application to predict protein sequences encoded in viral genomes. VIGOR determines the protein coding sequences by sequence similarity searching against curated viral protein databases. Please see the wiki to see list of all supported viruses. This work has been funded in whole or part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services... -
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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MoCalc2012
GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4
MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4. -
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Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases.
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Numerics for Chemical Engineering
Numerical models for chemical and process engineering
NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc... -
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BioPPSy
A biochemical property prediction system
...The program and its databases are all open-source. -
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JabRef
JabRef is a graphical application for managing bibliographical data
JabRef is a graphical application for managing bibliographical databases. JabRef is designed specifically for BibTeX bases, but can import and export many other bibliographic formats. JabRef runs on all platforms and requires Java 1.8 or newer. -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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bioNerDS
Bioinformatics Named Entity Recogniser for Databases and Software
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RAFTS3
Rapid Alignment Free Tool for Sequences Similarity Search
RAFTS3 can perform high-speed protein search comparisons locally using a desktop computer or laptop. RAFTS3 performed searches many times faster than those with BLASTp against large protein databases such as NR and Pfam, with a small loss of sensitivity depending on the similarity degree of the sequences. RAFTS3 is a new alternative for fast comparison of protein sequences, genome annotation and biological data mining. Preprint: http://dx.doi.org/10.1101/055269 Precomputed databases... -
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Acacia
A generic biodiversity database management system
An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard... -
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GLORIA Project
GLObal Robotic-telescopes Intelligent Array for e-Science
GLORIA stands for "GLObal Robotic-telescopes Intelligent Array". GLORIA will be the first free and open- access network of robotic telescopes of the world. It will be a Web 2.0 environment where users can do research in astronomy by observing with robotic telescopes, and/or analyzing data that other users have acquired with GLORIA, or from other free access databases, like the European Virtual Observatory (http://www.euro-vo.org). -
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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JUMP Database Query Plugin
DB Query Plugin for OpenJump
The JUMP DB Query Plugin is an extension for the OpenJUMP GIS platform that allows OpenJUMP users to give arbitrary database queries to retrieve and display geographic feature sets. Spatial databases currently supported are PostGIS, Oracle Spatial, MySQL, and SpatiaLite. -
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SuperAlign was fully updated as of 15 July 2013 and is now released under the name eAlign as well. A parallel corpora (bitext) aligning tool. Create TMX databases and align translations for Translation Memory databases. Use multiple files in multiple formats to align them with their translations. The full workflow is built in with a GUI interface. SuperAlign-eAlign uses the hunalign algorithm.
