Search Results for "Databases Open Source & DevTools"
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Showing 22 open source projects for "Databases Open Source & DevTools"
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Claude Scientific Skills
A set of ready to use Agent Skills for research, science, engineering
Claude Scientific Skills is a large open source collection of ready-to-use scientific capabilities that extend AI coding agents into full research assistants. The project provides more than 170 curated skills covering domains such as genomics, drug discovery, medical imaging, physics, and advanced data analysis. Each skill bundles documentation, examples, and tool integrations so agents can reliably execute complex multi-step scientific workflows. -
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Grafana
Leading open-source visualization and observability platform
Grafana OSS is the leading open-source platform for visualization and observability. It enables teams to query, visualize, alert on, and explore telemetry data from multiple sources in a single interface. With support for 100+ data source plugins—including Prometheus, Loki, Elasticsearch, InfluxDB, SQL/NoSQL databases, and OpenTelemetry—Grafana helps teams correlate metrics, logs, and traces across applications and infrastructure. -
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AWS Data Wrangler
Pandas on AWS, easy integration with Athena, Glue, Redshift, etc.
...Built on top of other open-source projects like Pandas, Apache Arrow and Boto3, it offers abstracted functions to execute usual ETL tasks like load/unload data from Data Lakes, Data Warehouses, and Databases. Convert the column name to be compatible with Amazon Athena and the AWS Glue Catalog. Run a query against AWS CloudWatchLogs Insights and convert the results to Pandas DataFrame. -
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ChemCrow
Chemcrow
ChemCrow is an AI-powered framework designed to assist in chemical research and discovery. It integrates AI models with chemical knowledge bases to provide intelligent recommendations for synthesis planning, reaction prediction, and material discovery. This tool helps automate and accelerate research in computational chemistry and drug development. -
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GeigerLog
Python program for Geiger counters and Environmental Sensors
GeigerLog is a combination of data logger, presenter, and analyzer, and is now released in version 2.1! Based on Python (Version 3), it runs on Linux, Windows, Macs, Raspberry Pi, and other. GeigerLog is WiFi-enabled for servers and clients; it can be monitored by SmartPhone. Initially developed for Geiger counters, it is now a more universal tool, which equally well handles data like temperature, air-pressure, humidity, CO2. Continues to support Geiger counters like GQ Electronic's... -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH... -
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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LightProfiler
Profiler for Oracle extended SQL trace files
LightProfiler – application for performance analysis of the Oracle databases. It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor... -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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metaProt
Pipeline to analyze coding regions in metagenomic projects
metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this. -
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OpenDWS is a hobby project to create a datawarehousing suite that: - Can work on different OS - Federates databases - Can run Data analyses using plugins on different databases This project is programmed in Python Language.
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Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.
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ATpy (Astronomical Tables in Python) is a Python module aimed at dealing with tables of astronomical data with a common API. To date, the following formats are supported: FITS, VO, and IPAC tables, and SQLite, MySQL, and PostgreSQL databases
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EUtils is a python client-side library for querying the NCBI's Entrez life science databases through the NCBI eUtils web services.
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DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
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This software screens a given peak list against web based NMR databases (nmrshiftdb, HMDB...) and return possible molecules. It also take a given molecule to return expected peaks list.
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