Search Results for "linux command" - Page 11
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Showing 2463 open source projects for "linux command"
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Qgama
Adjustment of local surveying networks, binary builds for Windows
The archive has been moved to https://ftp.gnu.org/gnu/gama/windows/ GNU Gama is a project dedicated to adjustment of geodetic networks. It is intended for use with traditional geodetic surveying which are still used and needed in special measurements (e.g., underground or high precision engineering measurements) . Qgama is a Qt based user interface for GNU Gama adjustment of geodetic networks in which XML input is complemented with a database. The most simple case is Sqlite3 file... -
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miRPV
miRPV: An automated pipeline for miRNA Prediction and Validation in si
miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04 -
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sdsorter
Easy manipulation of sdf molecular data files.
sdsorter provides convenient routines for manipulating the contents of sdf molecular data files based on the embedded sd tags. -
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A set of cross-platform tools for connecting via TCP/IP to the VOEvent transient astronomy alert network. Tools include a receiver/broker, a sender/publishing tool, and a VOEvent message checker. Runs on Linux, Mac OS X and Microsoft Windows.
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ECTk
ECTk - The electrochemical tool kit
...ECTk communicates via any analogue IO board supported by the comedi library. This offers a great flexibility as a large number of IO boards are supported by comedi. ECTk is running under Linux and was developed under Linux Ubuntu. ECTk was developed with the aim to conduct experiments in electrochemistry with a great flexibility. In particular, ECTk can be extended to satisfy the needs for a particular application. It is for example possible to drive, besides a potensiostat, simultaneously other instruments like a rotating electrode set-up. -
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XMD is a program for performing molecular dynamic simulations on metals and some ceramics materials at the atomic scale. It models atomic energies and dynamics using user defined pair potentialsl, EAM potentials and some hard coded potentials.
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Major looseless compression algorithms library and documentation. First project: Arithmetic, Huffman, LZ77, LZ78, LZW, RLE. Second project reimplements Deflate. Documentation explains major Entropy Compression Methods.
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opbdp
opbdp (non-linear) pseudo-Boolean optimization
opbdp is an implementation in C++ of an implicit enumeration algorithm for solving (non)linear 0-1 (or pseudo-Boolean) optimization problems with integer coefficients. A research report describing the techniques used in opbdp is included. -
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SMASH
Massively parallel software for quantum chemistry calculations
Scalable Molecular Analysis Solver for High-performance computing systems (SMASH) is massively parallel software for quantum chemistry calculations and released under the Apache 2.0 open source license. It is currently capable of energy, analytical gradient, and geometry optimization calculations of Hartree-Fock theory and Density Functional Theory (DFT), and energy calculations of Second-order Moller-Plesset (MP2) perturbation theory. DFT calculations can be performed on 100,000 CPU cores... -
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Mesh2HRTF is an open-source project aiming at providing an easy-to-use software package for the numerical calculation of HRTFs. It targets researchers in the field of binaural audio. In a nutshell, Mesh2HRTF simply reads geometrical data, calculates the corresponding sound field and outputs HRTFs. To support multiple computer platforms, the concept of Mesh2HRTF is to focus on a command-line tool, which forms the numerical core, i.e., an implementation of the 3-dimensional Burton-Miller...
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GDAL wheels for linux
GDAL wheels for python and C/C++ projects (Linux only)
To use precompiled wheels: 1) go to releases (Files) and download tarball needed; 2) install it with command: python3 -m pip install /path/to/wheel.whl Or simply use URL in pip: python3 -m pip install https://sourceforge.net/projects/gdal-wheels-for-linux/files/GDAL-3.1.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl/download URL may be found under "View details" button (i) To use GDAL in C/C++ project you need to link gdal lib AND all libs located at dir GDAL.libs (usually this folder resides inside python site-packages) To compile your own wheels see information given at forefather project: https://github.com/youngpm/gdalmanylinux Usually this is done via command `make wheels` GDAL wheels for Windows are provided by Christoph Gohlke at https://www.lfd.uci.edu/~gohlke/pythonlibs/#gdal Built with PROJ (proj.db is included), GEOS, EXPAT. ... -
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TRANSIMS is an integrated system of travel forecasting tools for modeling regional transport systems. For more information, visit http://code.google.com/p/transims/
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MiModD
Mutation Identification in Model Organism Genomes using Desktop PCs
MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the... -
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NOTE: Moved to https://github.com/vapier/pcalc Pcalc is a command line calculator handling HEX DEC OCT BIN. It can process a script, save variables to file, full math parser, parentheses, exponential, sin/cos, sqrt, date, inch/mm celsius/f, compound expressions ...
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Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.
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The ASCO project aims to bring circuit optimization capabilities to existing SPICE simulators using a high-performance parallel differential evolution (DE) optimization algorithm. It supports Eldo, HSPICE, LTspice, Spectre, and Qucs.
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Programming language designed to simplify the development of small and large-scale networked applications. PROSE includes an execution engine and language that compiles into platform-independent bytecode. Bytecode can also be assembled directly.
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GenReg
Generation of regular graphs
Efficient, complete and non-redundant generation of regular graphs as described in M. Meringer: Fast Generation of Regular Graphs and Construction of Cages. Journal of Graph Theory 30, 137-146, 1999. -
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WSClean
WSClean is a fast widefield interferometric imager
WSClean (w-stacking clean) is a fast generic widefield imager. It uses the w-stacking algorithm and can make use of the w-snapshot algorithm. As of Feb 2014, it is 2-12 times faster than CASA's w-projection, depending on the array configuration. It supports full-sky imaging and proper beam correction for homogeneous dipole arrays such as the MWA. WSClean allows Hogbom and Cotton-Schwab cleaning and has wideband, multiscale, compressed sensing and joined-polarization deconvolution modes.... -
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MasterSim
A co-simulation master for Functional Mockup Units (FMI 1.0 and 2.0).
A simulation master library, command line utility and user interface for simulating coupled systems of Functional Mock-up Units (FMU) for CoSimulation with FMI version 1 and 2. The master implements several modern algorithms, including Gauss-Seidel, Newton iteration, variable time stepping and step size control. -
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MITRE Annotation Toolkit
A toolkit for managing and manipulating text annotations
The MITRE Annotation Toolkit (MAT) is a suite of tools which can be used for automated and human tagging of annotations. Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. It can be customized for specific tasks (e.g.,... -
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Argos Translate
Open-source offline translation library written in Python
Argos Translate uses OpenNMT for translations and can be used as either a Python library, command-line, or GUI application. Argos Translate supports installing language model packages which are zip archives with a ".argosmodel" extension containing the data needed for translation. LibreTranslate is an API and web-app built on top of Argos Translate. Argos Translate also manages automatically pivoting through intermediate languages to translate between languages that don't have a direct... -
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adcptools
Set of functions to process acoustic Doppler current profiler data
adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments. -
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ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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HostDesigner
General purpose de novo molecular design software
...Download includes User's Manual, HostDesigner 4.3 source code (in Fortran), data files, example input, HDViewer executables for MacOS, Linux, and Windows, and mengine source code (in C). HostDesigner was developed and posted by author Dr. Benjamin P Hay