Search Results for "gnu linux" - Page 74
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Showing 8812 open source projects for "gnu linux"
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DEAPathways
Differential Expression Analysis for Pathways
This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967 -
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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Microcode update notification
Small startup script that notifies update info about CPU micorcode
Even a CPU has a little firmware inside. Since a lot of years it is possible to update it to fix little or bigger bugs. Usually this operation is done while updating your motherboard's BIOS, and the update is permanent. But thanks to the architecture of the linux kernel, we can update it at the last version every time we boot our OS. This is a really fast operation brought to you by microcode.ctl (in Ubuntu), and it permits to avoid waiting for an updated closed-source BIOS to solve bugs; it... -
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USSDpad
Linux GUI USSD Sender
You can manage and send your ussd code with ussdpad .its simple and easy to use gui program written by use python and qt4 - Shashika Layan * Install Method (ArchLinux) It's Available on Arch User Repository (AUR) so you can install it use yaourt $ yaourt -S ussdpad -
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privacyidea
two factor authentication management system
privacyIDEA is a management and authentication system for two factor authentication. You can use OTP tokens, OTP cards, SMS, Smartphone Apps to incorparte the second factor. It can even manage SSH keys and supports Offline OTP. The latest version can manage and enroll user certificates. Its modular design makes it easily enhancable. It runs on Linux. Applications and workflows can be connected to privacyIDEA hence enabling two factor authentication in your system logon, web... -
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Analyzer for Files
A tool to look into file contents
Analyzer for Files (AoF) is a tool to look into file contents, analyze the structure with installed plug-ins, and show the results with several split windows including converted data and a tree if successful. It was designed as a workbench with a core and plug-in extensions. It can handle the normal plain-text file and data, complex binaries supported with the corresponding plug-ins. What's more, the developers can deploy and release their own plug-ins according to the plug-in developing... -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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GimpPy uses img maps & an img as the input, output is a report.py file used to generate PDFs, the out files may run solo or chained together to make more complex multi page reports. Input required is a dict with vals for flds you have mapped on your img.
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PyLucid is a Open Source web content management system written in Python using the Django Framework. fully customizable output, expandable with plugins, i18n, L10n, Revision controled, support many database engines, WSGI conform and many more...
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GBirthday
Birthday Reminder that can be used with several backend databases
Birthday Reminder that can be used with Thunderbird Lightning, CSV, MySQL and Sunbird databases Development has moved to Github: https://github.com/lafrech/gbirthday -
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the "Simple Password Displayer" is a multiuser password managing software based on GnuPG, so every user has his own password to decrypt/sign the container.
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OpenXenManager is a graphical interface to manage XenServer / Xen Cloud Platform (XCP) hosts through the network. OpenXenManager is an open-source multiplatform clone of XenCenter (Citrix). The source code can now be found on GitHub using the homepage link below
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Aarit
Mud Server in Python Language playable via web browser
Aarit is a MUD playable via web browser and made in Python with twisted framework. -
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This (Python) tool allows you to easily create FPGA bitfiles for your embedded system, from several Open Source IPs (compatibles with the OpenCores Wishbone bus) . It will also generates the corresponding drivers (currently only Linux ones).
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at... -
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Alfanous
Quran Search Engine
Alfanous (The Lantern - الفانوس ) is an Arabic search engine API provide the simple and advanced search in the Holy Quran , more features and many interfaces... -
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RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions). RPy has been superseded by the RPy2 project: https://rpy2.github.io/
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PyMod
(OBSOLETE) PyMOL Plugin for Homology Modeling of Protein Structures
This is the UNOFFICIAL mirror to PyMod. Since the release of PyMod2.0, this repository will no longer be maintained. -
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The Indian Linux Project Goal is to build a Indian language enabled Linux distro & applications with support for Indian Languages
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huhamhire-hosts
hosts for Internet Freedom
Since the governments of some countries are using the blocking the internet access to several websites and web service providers which includes some world famous sites like Google, YouTube, twitter, Facebook, and Wikipedia etc., we designed this tiny utility in order to help people getting through the Internet blockade. Hosts Setup Utility provides basic tools to manage the hosts file on current operating systems. It also provides both support for Graphical Desktop environment with... -
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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Pymedia is a C/C++/Python multimedia module to allow encode/decode/play multimedia information in mp3,ogg,avi etc. formats. Based on ffmpeg with added features and simple Python interface. To be used in multimedia apps written in Python.
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**(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
