Search Results for "databases" - Page 7
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Showing 265 open source projects for "databases"
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GetData
Scientific Database Format
The GetData library provides an API to interface with Dirfile databases. The Dirfile database format is designed to provide a fast, simple, scalable format for storing and reading binary, synchronously-sampled, time-ordered data. -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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Big List of Naughty Strings
List of strings which have a high probability of causing issues
...It exists so developers and QA engineers can easily test edge cases that normal test data would miss, such as zero-width characters, right-to-left marks, emojis, foreign alphabets, and long or malformed strings. By throwing these strings at forms, APIs, databases, and UIs, teams can discover encoding bugs, sanitizer gaps, rendering issues, and security oversights early. The list is language-agnostic and repository-friendly, meaning you can consume it from CI pipelines or local scripts with minimal setup. Because it’s crowdsourced, it reflects real issues practitioners have faced in production, not just theoretical cases. ... -
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Zebrunner Community Edition
Test Automation Management Tool
Zebrunner CE (Community Edition) is a Test Automation Management Tool for continuous testing and continuous deployment. It allows you to run various kinds of tests and gain successive levels of confidence in the code quality. Zebrunner CE is integrated by default with Carina open-source TestNG framework and uses Jenkins as a CI Tool. It is built on top of popular docker solutions and includes Postgres database, Zebrunner Reporting, Jenkins Master/Slaves Nodes, Selenium Hub, Mobile... -
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lxspider
Educational Python web scraping case collection for many sites
...It focuses heavily on practical cases that illustrate how different platforms handle requests, authentication parameters, and anti-scraping protections. lxSpider includes examples targeting areas such as e-commerce platforms, social media services, content sites, research databases, and information portals. Many of the cases explore techniques related to request analysis, signature generation, and reverse engineering that are often needed when interacting with modern web applications. It also provides supplementary materials and tools used in crawling workflows, such as debugging utilities and reverse-engineering aids. -
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sshtunnel
SSH tunnels to remote server
...It supports local and remote bind addresses, password authentication, private keys, and configuration through Python code. sshtunnel is especially useful for developers, administrators, and automation scripts that need controlled access to databases, internal dashboards, or protected network services. Its value comes from making SSH forwarding easier to manage inside Python workflows without relying only on manual command-line SSH syntax. -
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc. - to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes. -
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SQLFlow
SQL compiler bridging databases and machine learning workflows
SQLFlow is an open source project designed to bridge the gap between traditional SQL-based data processing and modern machine learning workflows by extending SQL syntax with AI capabilities. It acts as a compiler that translates SQL programs into executable workflows, enabling users to train, evaluate, and deploy machine learning models directly from SQL statements. It integrates with multiple database engines such as MySQL, Hive, and MaxCompute, while also supporting machine learning... -
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Ansible Examples
A few starter examples of ansible playbooks, to show features
This repository collects practical, real-world examples of using Ansible to automate infrastructure, deployments, and configurations. Each directory demonstrates a specific use case—ranging from setting up web servers, load balancers, and databases to orchestrating multi-tier applications in cloud environments. The examples highlight common Ansible practices such as organizing inventories, writing reusable playbooks, using roles, and handling variables and templates. They’re designed to be adapted directly into your own infrastructure or to serve as reference blueprints when learning how to structure automation projects. ... -
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Rdbtools
Parse Redis dump.rdb files, Analyze Memory, and Export Data to JSON
Rdbtools is a parser for Redis' dump.rdb files. The parser generates events similar to an XML sax parser and is very efficient memory-wise. Rdbtools is written in Python, though there are similar projects in other languages. Every run of RDB Tool requires to specify a command to indicate what should be done with the parsed RDB data. Valid commands are JSON, diff, justkeys, justkeyvals and protocol. The JSON command output is UTF-8 encoded JSON. By default, the callback try to parse RDB data... -
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gasmask
All-in-one OSINT tool for reconnaissance and domain intelligence
...It aggregates intelligence such as domain details, email addresses, hostnames, and subdomains by querying search engines, DNS records, certificate transparency logs, and security databases. GasMasK integrates with a wide range of platforms and services including search engines, social media platforms, and security APIs to retrieve relevant information about a target. These sources include services like Shodan, Censys, Netcraft, VirusTotal, GitHub, and various DNS-related services, allowing investigators to build a comprehensive profile of a domain or organization. ... -
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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Orator
The Orator ORM provides a simple yet beautiful ActiveRecord implement.
...It is inspired by the database part of the Laravel framework, but largely modified to be more pythonic. All you need to get you started is the configuration describing your database connections and passing it to a DatabaseManager instance. If you have multiple databases configured you can specify which one is the default. For MySQL and PostgreSQL, the connectors are configured to return unicode strings. If you want to use the previous behavior just set the use_unicode configuration option to False. Once you have configured your database connection, you can run queries. To run a set of operations within a database transaction, you can use the transaction method which is a context manager. -
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Python DB-API 2.0 module for ADO
Use Microsoft ADO to read/write most data bases.
Python module that makes it easy to use Microsoft ADO for connecting with databases and other data sources. For CPython users, this module is included as part of pywin32 (https://github.com/mhammond/pywin32), and continued support will take place there. This fork will be maintained for Iron Python users. * Documentation at http://adodbapi.sourceforge.net/quick_reference.pdf or quick_reference.odb in the .zip -
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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FAKE2DB
Create custom test databases that are populated with fake data
Generate fake but valid data filled databases for test purposes using most popular patterns(AFAIK). Current support is sqlite, mysql, postgresql, mongodb, redis, CouchDB. The installation through pypi retrieves 'fake-factory' as a main dependency. db argument takes 6 possible options, sqlite, mysql, postgresql, mongodb, redis, CouchDB. name argument is OPTIONAL. When it is absent fake2db will name db's randomly. host argument is OPTIONAL. -
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survol
RDF-based framework monitoring business systems activity
A Python agent and a web interface aiming to help the analysis and investigation of a legacy application. A set of machines, processes, databases, programs etc ... all communicating with each other, manipulating your data, and whose software architecture has become, with time, complicated, difficult to understand, and undocumented. Data are aggregated with an RDF inference engine, creating a global vision of the business information processing. -
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Microblog
Microblogging application developed in my Flask Mega-Tutorial series
...The project includes user registration and login, password hashing, profile editing, and avatar support, but it goes deeper by illustrating how to implement following/follower relationships, posting short messages, and displaying personalized feeds. It integrates SQL databases through SQLAlchemy and shows how to manage migrations, query optimization, and pagination for scalable content delivery. The app also includes unit and integration tests to reinforce test-driven development practices. Additional features such as full-text search, localization, email notifications, and deployment configurations are included or discussed to take developers beyond the basics. -
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WikiSQL
A large annotated semantic parsing corpus for developing NL interfaces
A large crowd-sourced dataset for developing natural language interfaces for relational databases. WikiSQL is the dataset released along with our work Seq2SQL: Generating Structured Queries from Natural Language using Reinforcement Learning. Regarding tokenization and Stanza, when WikiSQL was written 3-years ago, it relied on Stanza, a CoreNLP python wrapper that has since been deprecated. If you'd still like to use the tokenizer, please use the docker image. -
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Flasky
Companion code to my O'Reilly book "Flask Web Development"
...It serves as both a tutorial and sample codebase that walks developers through building a full-featured web application, including user registration and login, role-based permissions, user profiles, and content creation. The project shows how to organize a Flask application into reusable blueprints, configure environment-specific settings, integrate SQL databases via SQLAlchemy, and manage migrations. Beyond the core web functionality, Flasky illustrates testing strategies using Python’s unittest framework, including tests for models, views, and authentication flows to promote test-driven development. -
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turniket
Registration passes at the turnstiles system
system is designed to control staff access to production databases, as well as taking into account their passage of time. -
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JDFeditor
GUI application for editing database files.
The purpose is to be a cross-platform, quick and simple database manager, main goal is to provide developers with a tool to produce small to medium size databases efficiently. If you need a database at its simplest form, without any extra hassle of knowing how to access the produced library. Then JDFeditor is the right tool for you. JDFeditor is bundled with an easy-to-use Python library: jdf_lib. jdf_lib will quickly load the content of your database into a variable. All you need to know is the filename! ... -
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NoSQLMap
Automated NoSQL database enumeration and web application exploitation
A security tool for detecting and exploiting vulnerabilities in NoSQL databases, similar to SQLMap for traditional databases. -
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forgetSQL
Python ORM wrapper for SQL databases (no longer maintained)
Moved to https://github.com/stain/forgetSQL