Search Results for "databases"
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Showing 24 open source projects for "databases"
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Build Securely on AWS with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Grafana
Leading open-source visualization and observability platform
...Its extensible plugin ecosystem integrates with cloud platforms, databases, and developer tools—allowing teams to build observability workflows without vendor lock-in. The easiest way to get started with Grafana is with Grafana Cloud, our fully managed, full-stack observability platform. -
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Claude Scientific Skills
A set of ready to use Agent Skills for research, science, engineering
...The framework follows the open Agent Skills standard and works with multiple AI development environments including Claude Code, Cursor, and Codex. Its primary goal is to reduce the friction of scientific computing by giving AI agents structured access to specialized libraries, databases, and research pipelines. Overall, the repository acts as a modular capability layer that transforms general AI agents into domain-aware computational scientists. -
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AWS Data Wrangler
Pandas on AWS, easy integration with Athena, Glue, Redshift, etc.
...Built on top of other open-source projects like Pandas, Apache Arrow and Boto3, it offers abstracted functions to execute usual ETL tasks like load/unload data from Data Lakes, Data Warehouses, and Databases. Convert the column name to be compatible with Amazon Athena and the AWS Glue Catalog. Run a query against AWS CloudWatchLogs Insights and convert the results to Pandas DataFrame. Get QuickSight dashboard ID given a name and fails if there is more than 1 ID associated with this name. List IAM policy assignments in the current Amazon QuickSight account. -
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ChemCrow
Chemcrow
ChemCrow is an AI-powered framework designed to assist in chemical research and discovery. It integrates AI models with chemical knowledge bases to provide intelligent recommendations for synthesis planning, reaction prediction, and material discovery. This tool helps automate and accelerate research in computational chemistry and drug development. -
Stop vibe-debugging.AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
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GeigerLog
Python program for Geiger counters and Environmental Sensors
...Continues to support Geiger counters like GQ Electronic's GMC-300/500/600 , RadMon, RadPro, Gamma-Scout, audio-click and other low-cost Geiger counters, IoT devices, I2C based sensors, GQ EMF devices. GeigerLog reads data from devices, saves them to databases, prints to screen and plots as auto-updated, customizable graphs. Quality control using Statistics, Scatter, Poisson, FFT & Autocorrelation, and more. Gamma Spectra - can be displayed, calibrated, and evaluated in GeigerLog! The Raspberry Pi 4, 5 qualify as GeigerLog hosts. -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc. - to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes. -
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Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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LightProfiler
Profiler for Oracle extended SQL trace files
LightProfiler – application for performance analysis of the Oracle databases. It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor parameters, blocking locks, events and etc.) -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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metaProt
Pipeline to analyze coding regions in metagenomic projects
metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this. -
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Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.
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ATpy (Astronomical Tables in Python) is a Python module aimed at dealing with tables of astronomical data with a common API. To date, the following formats are supported: FITS, VO, and IPAC tables, and SQLite, MySQL, and PostgreSQL databases
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OpenDWS is a hobby project to create a datawarehousing suite that: - Can work on different OS - Federates databases - Can run Data analyses using plugins on different databases This project is programmed in Python Language.
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EUtils is a python client-side library for querying the NCBI's Entrez life science databases through the NCBI eUtils web services.
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DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
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This software screens a given peak list against web based NMR databases (nmrshiftdb, HMDB...) and return possible molecules. It also take a given molecule to return expected peaks list.
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Green Cloud Online portal
Green cloud: A versatile sensor based precision agriculture system, in
In Green Cloud here is a central global server which does the work of global database management along with providing complex analysis services for the users (farmers, scientists) through the client machines and the public access web portal. The existing agricultural databases throughout the world can also be used for inference purposes and their data may also be updated by our server. The meteorological servers can be accessed for climate data.This server-client architecture mandatory in present and even near-future circumstances as the client machine has to be low-power and low-cost for the feasibility of the system in Indian context. ...
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