Search Results for "algorithm" - Page 7
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Showing 274 open source projects for "algorithm"
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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node2vec
Learn continuous vector embeddings for nodes in a graph using biased R
The node2vec project provides an implementation of the node2vec algorithm, a scalable feature learning method for networks. The algorithm is designed to learn continuous vector representations of nodes in a graph by simulating biased random walks and applying skip-gram models from natural language processing. These embeddings capture community structure as well as structural equivalence, enabling machine learning on graphs for tasks such as classification, clustering, and link prediction. ... -
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Algorithms in Python
Data Structures and Algorithms in Python
...It also serves as a playground where you can add problems, measure performance, and compare different algorithmic approaches. For anyone striving to move from “I know the syntax” to “I know how to use the right algorithm at the right time,” this repository is a practical asset. -
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LeapFrog Optimizer
Open Source Optimizing Algorithm Written in Python
name: leap frog optimizer version: 0.5 ALPHA author: Mark Redd email: redddogjr@gmail.com written for python version: 2 optimizer algorithm website: http://www.r3eda.com/ about: This optimizer was written based on the algorithm published by Dr. R. Russell Rhinehart. A full explanation of the algorithm can be found at the following URL: http://www.r3eda.com/leapfrogging-optimization-algorithm/ The following are "key references" published on the optimization website explaining the technique: - Rhinehart, R. ... -
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Of Mages and Magic
A Simple RPG fighting game for teaching Python
Of Mages and Magic is an RPG based fighting game which may be used to teach simple programming concepts. Students write artificial intelligences which hook into the main Of Mages and Magic executable. These mages can be organised into teams which fight each other until only one team remains. The game is currently in early alpha, meaning some aspects of the interface are a bit clunky. However, in its current iteration, it is fairly suitable for teaching. Any and all feedback would be... -
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mergepbx
script for merging XCode project files in git
...Simply adding files can lead to merge conflicts that have to be solved manually, although it would be possible to resolve the conflict automatically if the merge algorithm would be aware of the structure of Xcode's project file. After long and annoying merge sessions in one of my projects, I came to the conclusion, that writing a merge driver for git which understands the structure of the project file would be a worthwhile endeavour, as it would save me from solving the merge conflicts for my co-workers. ... -
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pySimiam
Robot simulator inspired by Sim.I.Am
PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm. -
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Morphix supports you in finding solutions in the product development. By using a morphological box and the NOA algorithm supports Morphix you by determining the best possible combination of individual product attributes.
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ShaSeSha
Implementations of Shamir's Secret Sharing algorithm
Javascript, Python, C++ implementations of Shamir's Secret Sharing algorithm. This is very much a work in progress, and while the functionality is there to split and join, it needs work, cleanup, documentation, profiling and testing. It is only provided in the hopes it may be useful. I make absolutely NO guarantees or warranties, not even of merchantability, either expressed or implied, and do not make any claims about the security or reliability of this project. -
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lxnstack
A program to align and stack astronomical images.
... * sub-pixel precision (0.1 pixel for phase correlation and 0.01 pixel for manual alignment). * Automatic image derotation. * FITS file support (by installing the python2 package 'astropy') * Hot pixels suppression algorithm * CR2 files native support * Can load/save video * Grayscale RAW image support * Editing of result image's levels. * Light curve generation -
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Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013. -
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SHLOC Multiplayer BackGammon
simple backgammon to be played over the net
Some Hundred Lines of Code Multiplayer Backgammon Simple Backgammon-Game to be played over the network. Incorporates an algorithm to roll the dice in a way that can not be cheated -
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ExSTraCS
Extended Supervised Tracking and Classifying System
This advanced machine learning algorithm is a Michigan-style learning classifier system (LCS) developed to specialize in classification, prediction, data mining, and knowledge discovery tasks. Michigan-style LCS algorithms constitute a unique class of algorithms that distribute learned patterns over a collaborative population of of individually interpretable IF:THEN rules, allowing them to flexibly and effectively describe complex and diverse problem spaces. -
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MultiPlink
[UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"
Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor... -
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement and its application to ordering in glassy hard sphere colloids. ...
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Unsupervised Random Forest
On-line Unsupervised Random Forest
...It supports on-line prediction of new observations (no need to retrain); and supports datasets that contain both continuous (e.g. CPU load) and categorical (e.g. VM instance type) features. In particular, we use an unsupervised formulation of the Random Forest algorithm to calculate similarities and provide them as input to a clustering algorithm. For the sake of efficiency and meeting the dynamism requirement of autonomic clouds, our methodology consists of two steps: (i) off-line clustering and (ii) on-line prediction. RF+PAM can: Cluster observations (Unsupervised Learning) Calculate the dissimilarity between 2 or more observations (how different two observations are) -
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. -
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Neural Libs
Neural network library for developers
This project includes the implementation of a neural network MLP, RBF, SOM and Hopfield networks in several popular programming languages. The project also includes examples of the use of neural networks as function approximation and time series prediction. Includes a special program makes it easy to test neural network based on training data and the optimization of the network. -
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fitGCP
Fitting genome coverage distributions with mixture models
...Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147 -
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MITRE Common Layer 3
Approach to choose MANET routing peers for existing protocols.
Common Layer 3 presents an approach that allows an algorithm to choose IP routing peers intelligently among the nodes in a MANET but does not involve any modifications to existing IP routing protocols. In addition, our approach works as a pure interface between (any) MANET radio terminal and any IP router, so nodes using our interface interoperate with nodes that do not use this interface or with nodes using different algorithms to select routing peers. -
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Eye candy showing parallel Conway's Life games in the bit planes of the screen, using boolean BitBlt operations. (Independently rediscovered algorithm given already in Smalltalk-80 Blue Book, by the inventors of BitBlt.)
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LWPR
Locally Weighted Projection Regression (LWPR)
Locally Weighted Projection Regression (LWPR) is a fully incremental, online algorithm for non-linear function approximation in high dimensional spaces, capable of handling redundant and irrelevant input dimensions. At its core, it uses locally linear models, spanned by a small number of univariate regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. -
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ThermV
Comprehensive thermal analysis software package
ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project is currently in alpha stage, where individual modules will be provided for data analysis. ... -
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MusicPlayer
Music player - endlessly plays your music
This music player is supposed to be simple and all centered around an infinite intelligent queue (some other players call this PartyShuffle or DJ mode). You can manually add songs to it - but if you don't or the queue gets too short, it will automatically intelligently fill it with further songs. The intelligent queue decision currently is based on: * song ratings * context-based choices, e.g. related songs more likely Other features of this player: * open source, simplified BSD... -
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MRA
A general recommender system with basic models and MRA
Multi-categorization Recommendation Adjusting (MRA) is to optimize the results of recommendation based on traditional(basic) recommendation models, through introducing objective category information and taking use of the feature that users always get the habits of preferring certain categories. Besides this, there are two advantages of this improved model: 1) it can be easily applied to any kind of existing recommendation models. And 2) a controller is set in this improved model to provide...