Search Results for "algorithm" - Page 7
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Showing 234 open source projects for "algorithm"
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Simple CGI script which allows you to transfer sensitive ascii data (passwords, hashes, pem keys) via HTTPS. SSL MUST BE implemented by webserver. Algorithm: - Paste new data into textarea, submit. You get link Link consists of three md5 hashes from salt. File, containing your data, named that way. So, it is hard to bruteforce links/files. - Whenever link being opened, script reads file and prints its content into brower in text/plain content-type. Afterthat, script removes file. ...
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hrefinder
Detection of homologous recombination events from SNP data
...Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of SNPs differs from the ancestral allele, it may be better explained as a mutation or sequencing error. But if a series of SNP alleles differ from the ancestral pattern, then it may be more likely that an HRE has occurred, particularly if the allele pattern matches that from another part of the tree better than that of the ancestral node. -
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl... -
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Game of Turmites
Conway's Game of Life and Turmites Combined!
...It's all very randomly generated, and there is no way for any user input. I'll consider putting some in later. I had been wanting to make the Game of Life for some time as well as make some kind of genetic algorithm based code. So, here is what I came up with. While this may just seem like simplify a graphical display of what boredom looks like... well, it really doesn't go much past that point. If you Don't know what Conway's game of life is: It's the Black (Or white, I may have changed them) cells that follow a simple set of instructions based on the state of its adjacent cells. ... -
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Mix
Mix is a tool to combine multiple assemblies from NGS data.
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length. Please note that Mix has moved to: https://github.com/massyah/MIX -
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pyisocalc
Isotopic pattern calculator in python 2.x
This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib. -
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Search Engine in python
All student and developers are invited to join this web search engine
This search engine project is created by a computer science student to challenge how search results are returned. Importance is placed on how web pages are ranked by a quick and efficient algorithm. All hands on deck is how we are calling this project. Algorithm design is really important and creative methods from better search results or web crawling is welcomed from all amateur programmers, students, web developers, software developers and computer science students from around the globe. We believe there's a better way to search, and that's why we are working on this project, why not join us. -
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Evolving Objects
This project have been merged within Paradiseo.
See the new project page: https://nojhan.github.io/paradiseo/ (Archived project page: http://eodev.sourceforge.net/) -
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This project provides a set of Python tools for creating various kinds of neural networks, which can also be powered by genetic algorithms using grammatical evolution. MLP, backpropagation, recurrent, sparse, and skip-layer networks are supported.
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im2ascii
Image to ASCII converter that takes character shape into account
im2ascii is a small python script that converts images to ascii-art. Unlike common ascii-art generators, it does not only use each character's mean brightness, but matches the full character shape. Pro: Better ascii-art quality (see screenshots for examples) Con: Matching is very resource intensive Dependencies: Python 2.7, PIL, numpy, scipy -
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Pronac MediaMonkey Extension
Recommends music based upon your current taste.
...Play the first song from the Now Playing list, it'll recommend you next songs from the same list. NOTE: MAKE SURE THAT SONG SHUFFLE IS TURNED OFF WHILE USING PRONAC. Based upon K-Nearest Neighbor Machine Learning Algorithm, K-Fold Cross Validation and EchoNest for audio features. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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WiFi Location Tracking
Location tracks objects based on SSID strength in 2D environments
This simple algorithm gives an example of location tracking in indoor environment using WiFi signals strengths sent to a local sever machine which then determines the clients location. -
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Fleuron
Silent flash drive copier
Fleuron is a silent flash drive copier. When a flash drive is connected, Fleuron automatically starts copying the data with a Breadth First Search algorithm. In this way, the root directories are copied first and as time passes, deeper directories are copied. Fleuron also randomly stops for random amounts of seconds to allow the drive to be safely removed and to avoid detection. Fleuron can be used for data backup, flash synchronization and undetectable data copying. Note: Currently Fleuron only works on Linux systems. -
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Stanford Machine Learning Course
machine learning course programming exercise
...The repository covers a broad set of topics such as linear regression, logistic regression, neural networks, clustering, support vector machines, and recommender systems. Each folder corresponds to a specific algorithm or concept, making it easy for learners to navigate and practice. The exercises serve as practical, hands-on reinforcement of theoretical concepts taught in the course. This collection is valuable for students and practitioners who want to strengthen their skills in machine learning through coding exercises. -
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RSAmake
An Cryptography software with RSA algorithm
An Cryptography software with RSA algorithm RSAmake using Python and WxPython written -
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FactHash
Factorial Hashing Function
...I updated this, with a different hash than original, since I found a potential collision on some blocks, not but specific to that challenge. To further correct this, I modified the padding when it's less than the block size. I hold no guarantee of the security of this algorithm, USE AT YOUR OWN RISK. I have had no 3rd party analysis done on the algorithm to date, but research is welcome, and a challenge is even provided in CHALLENGE.txt. -
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sqlamp is an implementation of an efficient algorithm for working with hierarchical data structures — Materialized Path. sqlamp uses (and depends of) SQLAlchemy.
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GWCNV is a genome-wide algorithm for detecting CNV associations with diseases. It works directly on a transformation of intensity data. It is powerful and sensitive in detecting small CNV associations, and retains high power for large CNVs.
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The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
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We here present a novel computer algorithm, called AutoClickChem, capable of performing many click-chemistry reactions in silico. In silico modeling of click-chemistry products may prove useful in rational drug design and drug optimization.
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Clinical Evidence Detector
Detector of clinical evidence
This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia. http://www.ics.mq.edu.au/~diego/publications/hikm12.pdf -
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Implementation of Artificial Inteligence algorithms in python: - Ant Colony Optimization - Greed Algorithm
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imbatcher is an image batcher and rfl Registax Frame List creator that use an Mean Square Difference algorithm to separate images from the same set automatically .
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DSS student toolbox is an interface created over the Direct Sequential Simulation algorithm created by A. Soares, 2001. It allows you to launch this simulation method using simple tools from a GUI. NOTE: this software development is deprecated. You can perform the same operations in our newest software GEOMS2 (beta release). You can download it here: https://sourceforge.net/projects/geoms2/
