Search Results for "research" - Page 69
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Showing 2809 open source projects for "research"
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Observe astronomical library
astronomical observing tool
Observe library is an astronomical for observers that helps planning and managing observations. -
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Pysimony
A Pythonic Implementation of Parsimony Inference of Phylogeny
UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An... -
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pylabrad development has moved to GitHub: https://github.com/labrad/pylabrad Packages are distributed through PyPI: https://pypi.python.org/pypi/pylabrad
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GraVol
Drawing-based volume calculator. GraVol=Graph Volume
GraVol is designed to aid archaeologists in calculating the volume of any revolved container, such as wheel-thrown pottery. It does this using only a drawing of the vessel, and a height or diameter measurement. Instruction video: http://www.youtube.com/watch?v=pC8VReY83q4 Documentation of development: faculty.berea.edu/pearcej/CSC493/projects-11/jonestra-final.pdf -
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pyscope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code. -
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Evolving Objects
This project have been merged within Paradiseo.
See the new project page: https://nojhan.github.io/paradiseo/ (Archived project page: http://eodev.sourceforge.net/) -
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u/sbmv2012
Taxonomy assignment of metazoans using a python based pipeline
The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database. -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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Primer Design Tool
Design PCR primers
A simple tool to design DNA primers for mutagenesis in BGME lab (JHU). Allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them. -
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
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brocc
BLAST Read and OTU Consensus Classifier
NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes. -
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GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
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Pyfab
Python library for fab/lab control
Allows one to program fablab (factory and/or laboratory) in the same way as we program computer. Imagine commands like: "dim screw12 as new screw" or "mold(form_piston_081212, brass)" or ''gear(3)=lasercut(steel2,"biggear.gc")". This approach will let us program highly automated and self-deploying or even self-replicating factories. I am more engineer than programmer and just beginner in python. So it looks like community help will be needed :) -
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The neuroimaging in python (NIPY) project is an environment for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI).
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pyBioImage
Biological Imaging Software suite
The pyBioImage is a python a python based biological imaging suite tailored to the problem of finding Germinal Center "spots" within multidimensional microscopy images as it is described in the research paper: "Software tool for 3D extraction of germinal centers", by David N. Olivieri, Merly Escalona and Jose Faro. -
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number...
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Multi File Fuzzer
Multi File Fuzzer aims to facilitate the discovery of vulnerability
Multi File Fuzzer aims to facilitate the discovery of vulnerability "FileFormat" in applications. Multi File Fuzzer keeps the structure of the format while injecting corrupted data to try to crash the target application. -
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Solarstorm
A rethinking of the Operating System Ecosystem.
...We have decided upon a core programming language for the kernel, and the core language for almost everything else. With a focus on isolating the MAJOR kernel features from the system itself, in what until now has remained research only instances, we hope to create a fully functioning exokerne. All code at this time will be available only via a git repository. -
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Redundancy due to cut-paste operations in text creates bias in machine learning for NLP. This module takes a directory and produces a subset of the files in that directory (in a list) with an upper bound on similarity between two files.
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is... -
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Pronac MediaMonkey Extension
Recommends music based upon your current taste.
A music recommendation engine. It is meant to be an add-on for popular media players like Winamp, Amarok, Rhythmbox or Banshee. Currently supports only MediaMonkey Player. Downlaod, extract and run "pronac.exe". Play the first song from the Now Playing list, it'll recommend you next songs from the same list. NOTE: MAKE SURE THAT SONG SHUFFLE IS TURNED OFF WHILE USING PRONAC. Based upon K-Nearest Neighbor Machine Learning Algorithm, K-Fold Cross Validation and EchoNest for audio features. -
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PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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jLab est une plate-forme scientifique destinée à être l'outil de travail privilégié des étudiants, enseignants, ingénieurs, scientifiques et chercheurs. jLab est totalement modulaire et facilement extensible via un système de modules
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FBA-Machine
Time on Task observation tool for educators and psychologists
FBA-Machine is a time on task observation tool designed for special educators and school psychologists. It allows for accurate timing of individual on-task and off-task events rather than sampling intervals like a paper observation. Useful for planning behavior support plans and for evaluating the effectiveness of pharmaceutical interventions. -
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Otto's Workshop
Geomatics & mapping tools for the masses!
The purpose of this workshop is to share the tools created as an aid to our everyday work with students, enthusiasts and specialists interested in the development and use of new technologies including (but not limited to) geomatics, mapping, web mapping services (WMS), drafting, remote sensing, GIS and related occult sciences of Gaia. Check out the NBR (dn2nbr) and NDVI (dn2ndvi) calculating tools for GRASS GIS at the top menu!!!
