Search Results for "data collection algorithm" - Page 6
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Showing 193 open source projects for "data collection algorithm"
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DiagSim
Diagnostics simulation for particle accelerators
DiagSim is a collection of Python modules for simulating beam diagnostics in particle accelerators, at the moment only cavity BPMs, with other types of BPMs and other diagnostics to follow. Or so we think. Anyway, we use beam data exported from beam trackers, trace the signals through the diagnostics and processing, so that they can be processed as real data, and the input and measured beam parameters can be compared. -
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy. -
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CogPy
Cognitive Python
Cognitive Python is a cross-platform library for designing and conducting psychological experiments in Python. A few of its main features are: - A full-featured 2D display library for rapid development - Full control of computer I/O (display, mouse, keyboard, gamepad, joystick, audio) - Advanced library of data collection techniques - Data export to NumPy/SciPy, R, MATLAB, and Microsoft Excel - Compatibility with PyACT-R for cognitive modeling If you are interested... -
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CAPLET
GDS visualization and parallelized capacitance extraction
Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material. -
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Simple CGI script which allows you to transfer sensitive ascii data (passwords, hashes, pem keys) via HTTPS. SSL MUST BE implemented by webserver. Algorithm: - Paste new data into textarea, submit. You get link Link consists of three md5 hashes from salt. File, containing your data, named that way. So, it is hard to bruteforce links/files. - Whenever link being opened, script reads file and prints its content into brower in text/plain content-type. Afterthat, script removes file. So...
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hrefinder
Detection of homologous recombination events from SNP data
This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of SNPs... -
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp... -
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Mix
Mix is a tool to combine multiple assemblies from NGS data.
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes... -
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GIIAF Microscopy Library
The GIIAF Microscopy Library, that uses customised OMERO software
This project incorporates a suite of tools that aim to allow researchers within Griffith's Imaging and Image Analysis Facility (GIIAF) to efficiently and effectively provide secure, centralised, web-accessible data storage, management and manipulation. The open-source Java-based OMERO software was customised to provide most of the features of this project. -
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pyisocalc
Isotopic pattern calculator in python 2.x
This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib. -
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APRSgoodies
APRS goodies for HAM radio
Collection of HAM radio APRS tools: - METAR to APRS WX data injector -
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niftilib
** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **
niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/ -
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PyLibrary
Libraries for Python developers.
Development in Python (be it website or an App development or implementation of an automation framework) always involves certain operations like handling db queries, operations on web, development of data structures, windows operations (handing services, registries), logging and many more... What, if you have these libraries handy with you all the time? Just import and start using them.. In comes PyLibrary.. PyLibrary is a collection of infrastructure libraries that aid faster... -
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Fleuron
Silent flash drive copier
Fleuron is a silent flash drive copier. When a flash drive is connected, Fleuron automatically starts copying the data with a Breadth First Search algorithm. In this way, the root directories are copied first and as time passes, deeper directories are copied. Fleuron also randomly stops for random amounts of seconds to allow the drive to be safely removed and to avoid detection. Fleuron can be used for data backup, flash synchronization and undetectable data copying. Note: Currently Fleuron... -
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totaldepth
Petrophysical data processing and presentation.
TotalDepth is an Open Source, cross platform, software collection that can process petrophysical data from the oil field such as wireline logs, seismic data and so on. Conventional, proprietary, software for petrophysical data tends to be expensive to licence, restrictive, slow to develop for and tied to expensive hardware. TotalDepth changes all of that. TotalDepth is open and cross-platform, and produces results straight to the bowser. TotalDepth supports such technologies such as HTML5... -
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ebookutils is a collection of utilities which are useful for working with ebooks, specifically the REB1100/1150/1200 models made by RCA/Gemstar in the early 2000s.
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PyFileSync is a set of tools for over-the-web file synchronization and data collection. Currently it consists of one component: PyFileServer - WSGI/Web application for sharing multiple filestructures/realms via WebDAV
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GWCNV is a genome-wide algorithm for detecting CNV associations with diseases. It works directly on a transformation of intensity data. It is powerful and sensitive in detecting small CNV associations, and retains high power for large CNVs.
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sqlamp is an implementation of an efficient algorithm for working with hierarchical data structures — Materialized Path. sqlamp uses (and depends of) SQLAlchemy.
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The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
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General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
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Some tools related to the Music Ontology - including domain-specific Semantic Web crawlers, audio collection management and mapping tools
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A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
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